Analysis of interatomic Contacts of Structural Units in PDB entry:
5VIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VIE entry

There are 4 chains in PDB entry 5VIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 338ILE 1027
B
 TYR 13ASN 24
C
 GLU 334ILE 1027
D
 TYR 13ASN 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 5VIE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
339 347Right-handed alpha
Helix 2
AA2
A
350 365Right-handed alpha
Helix 3
AA3
A
366 381Right-handed alpha
Helix 4
AA4
A
384 398Right-handed alpha
Helix 5
AA5
A
400 415Right-handed alpha
Helix 6
AA6
A
418 432Right-handed alpha
Helix 7
AA7
A
434 449Right-handed alpha
Helix 8
AA8
A
452 467Right-handed alpha
Helix 9
AA9
A
471 489Right-handed alpha
Helix 10
AB1
A
496 501Right-handed alpha
Helix 11
AB2
A
506 527Right-handed alpha
Helix 12
AB3
A
558 565Right-handed alpha
Helix 13
AB4
A
566 571Right-handed alpha
Helix 14
AB5
A
589 599Right-handed alpha
Helix 15
AB6
A
606 608Right-handed 310
Helix 16
AB7
A
610 621Right-handed alpha
Helix 17
AB8
A
638 643Right-handed alpha
Helix 18
AB9
A
675 679Right-handed 310
Helix 19
AC1
A
697 702Right-handed alpha
Helix 20
AC2
A
703 706Right-handed 310
Helix 21
AC3
A
730 737Right-handed alpha
Helix 22
AC4
A
770 782Right-handed alpha
Helix 23
AC5
A
799 804Right-handed alpha
Helix 24
AC6
A
804 809Right-handed alpha
Helix 25
AC7
A
839 843Right-handed 310
Helix 26
AC8
A
844 858Right-handed alpha
Helix 27
AC9
A
869 871Right-handed 310
Helix 28
AD1
A
872 882Right-handed alpha
Helix 29
AD2
A
897 905Right-handed alpha
Helix 30
AD3
A
906 908Right-handed 310
Helix 31
AD4
A
920 929Right-handed alpha
Helix 32
AD5
A
940 943Right-handed 310
Helix 33
AD6
A
944 954Right-handed alpha
Helix 34
AD7
A
955 959Right-handed 310
Helix 35
AD8
A
962 976Right-handed alpha
Helix 36
AD9
A
976 994Right-handed alpha
Helix 37
AE1
A
998 1019Right-handed alpha
Helix 38
AE2
C
335 347Right-handed alpha
Helix 39
AE3
C
350 362Right-handed alpha
Helix 40
AE4
C
366 381Right-handed alpha
Helix 41
AE5
C
384 398Right-handed alpha
Helix 42
AE6
C
400 415Right-handed alpha
Helix 43
AE7
C
418 432Right-handed alpha
Helix 44
AE8
C
434 449Right-handed alpha
Helix 45
AE9
C
452 467Right-handed alpha
Helix 46
AF1
C
471 487Right-handed alpha
Helix 47
AF2
C
496 501Right-handed alpha
Helix 48
AF3
C
506 526Right-handed alpha
Helix 49
AF4
C
527 529Right-handed 310
Helix 50
AF5
C
558 565Right-handed alpha
Helix 51
AF6
C
566 571Right-handed alpha
Helix 52
AF7
C
589 599Right-handed alpha
Helix 53
AF8
C
606 608Right-handed 310
Helix 54
AF9
C
610 622Right-handed alpha
Helix 55
AG1
C
638 643Right-handed alpha
Helix 56
AG2
C
675 679Right-handed 310
Helix 57
AG3
C
697 702Right-handed alpha
Helix 58
AG4
C
703 706Right-handed 310
Helix 59
AG5
C
730 738Right-handed alpha
Helix 60
AG6
C
770 783Right-handed alpha
Helix 61
AG7
C
799 804Right-handed alpha
Helix 62
AG8
C
804 809Right-handed alpha
Helix 63
AG9
C
839 843Right-handed 310
Helix 64
AH1
C
844 858Right-handed alpha
Helix 65
AH2
C
869 871Right-handed 310
Helix 66
AH3
C
872 882Right-handed alpha
Helix 67
AH4
C
897 905Right-handed alpha
Helix 68
AH5
C
906 908Right-handed 310
Helix 69
AH6
C
920 929Right-handed alpha
Helix 70
AH7
C
940 943Right-handed 310
Helix 71
AH8
C
944 954Right-handed alpha
Helix 72
AH9
C
955 959Right-handed 310
Helix 73
AI1
C
962 976Right-handed alpha
Helix 74
AI2
C
976 994Right-handed alpha
Helix 75
AI3
C
995 997Right-handed 310
Helix 76
AI4
C
998 1019Right-handed alpha
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There are 6 sheets in PDB entry 5VIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 604first strand
Strand 2
A
576 582parallel
Strand 3
A
546 552parallel
Strand 4
A
625 628parallel
Strand 5
A
648 652parallel
Strand 6
A
666 670parallel
Strand 7
A
685 689parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
766 767first strand
Strand 2
A
709 711parallel
Strand 3
A
724 727anti-parallel
Strand 4
A
817 821anti-parallel
Strand 5
A
792 796parallel
Strand 6
A
786 789anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
890 894first strand
Strand 2
A
861 867parallel
Strand 3
A
832 835parallel
Strand 4
A
910 912parallel
Strand 5
A
933 934parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
601 604first strand
Strand 2
C
576 582parallel
Strand 3
C
546 552parallel
Strand 4
C
625 628parallel
Strand 5
C
648 651parallel
Strand 6
C
666 669parallel
Strand 7
C
685 688parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
766 767first strand
Strand 2
C
709 711parallel
Strand 3
C
724 727anti-parallel
Strand 4
C
817 821anti-parallel
Strand 5
C
792 796parallel
Strand 6
C
786 789anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
890 894first strand
Strand 2
C
861 867parallel
Strand 3
C
832 835parallel
Strand 4
C
910 912parallel
Strand 5
C
933 934parallel
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