Analysis of interatomic Contacts of Structural Units in PDB entry:
5VIK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VIK entry

There is 1 chain in PDB entry 5VIK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 19GLU 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5VIK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 59Right-handed alpha
Helix 2
AA2
A
67 72Right-handed alpha
Helix 3
AA3
A
72 80Right-handed alpha
Helix 4
AA4
A
81 84Right-handed 310
Helix 5
AA5
A
133 144Right-handed alpha
Helix 6
AA6
A
146 163Right-handed alpha
Helix 7
AA7
A
198 202Right-handed 310
Helix 8
AA8
A
203 213Right-handed alpha
Helix 9
AA9
A
251 261Right-handed alpha
Helix 10
AB1
A
292 313Right-handed alpha
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There are 2 sheets in PDB entry 5VIK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
226 229anti-parallel
Strand 3
A
47 51anti-parallel
Strand 4
A
36 40anti-parallel
Strand 5
A
117 123anti-parallel
Strand 6
A
103 110anti-parallel
Strand 7
A
92 98anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
178 185anti-parallel
Strand 3
A
166 172anti-parallel
Strand 4
A
276 285anti-parallel
Strand 5
A
265 273anti-parallel
Strand 6
A
215 218anti-parallel
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