Analysis of interatomic Contacts of Structural Units in PDB entry:
5VIO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VIO entry

There are 4 chains in PDB entry 5VIO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 670	VAL 940
B	LEU 670	VAL 940
C	LEU 670	VAL 940
D	LEU 670	VAL 940

There are 45 helices in PDB entry 5VIO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	718	730	Right-handed alpha
Helix 2	AA2	A	762	769	Right-handed alpha
Helix 3	AA3	A	776	797	Right-handed alpha
Helix 4	AA4	A	842	846	Right-handed 310
Helix 5	AA5	A	847	854	Right-handed alpha
Helix 6	AA6	A	855	858	Right-handed 310
Helix 7	AA7	A	859	877	Right-handed alpha
Helix 8	AA8	A	881	885	Right-handed 310
Helix 9	AA9	A	886	898	Right-handed alpha
Helix 10	AB1	A	908	919	Right-handed alpha
Helix 11	AB2	A	928	934	Right-handed alpha
Helix 12	AB3	A	935	939	Right-handed 310
Helix 13	AB4	B	718	730	Right-handed alpha
Helix 14	AB5	B	762	769	Right-handed alpha
Helix 15	AB6	B	776	797	Right-handed alpha
Helix 16	AB7	B	835	839	Right-handed 310
Helix 17	AB8	B	842	846	Right-handed 310
Helix 18	AB9	B	847	854	Right-handed alpha
Helix 19	AC1	B	855	858	Right-handed 310
Helix 20	AC2	B	859	877	Right-handed alpha
Helix 21	AC3	B	886	898	Right-handed alpha
Helix 22	AC4	B	908	919	Right-handed alpha
Helix 23	AC5	B	928	934	Right-handed alpha
Helix 24	AC6	B	935	939	Right-handed 310
Helix 25	AC7	C	719	730	Right-handed alpha
Helix 26	AC8	C	762	769	Right-handed alpha
Helix 27	AC9	C	776	797	Right-handed alpha
Helix 28	AD1	C	842	846	Right-handed 310
Helix 29	AD2	C	847	854	Right-handed alpha
Helix 30	AD3	C	855	858	Right-handed 310
Helix 31	AD4	C	859	877	Right-handed alpha
Helix 32	AD5	C	908	919	Right-handed alpha
Helix 33	AD6	C	928	934	Right-handed alpha
Helix 34	AD7	C	935	939	Right-handed 310
Helix 35	AD8	D	722	730	Right-handed alpha
Helix 36	AD9	D	762	769	Right-handed alpha
Helix 37	AE1	D	776	797	Right-handed alpha
Helix 38	AE2	D	833	837	Right-handed 310
Helix 39	AE3	D	842	846	Right-handed 310
Helix 40	AE4	D	847	854	Right-handed alpha
Helix 41	AE5	D	859	877	Right-handed alpha
Helix 42	AE6	D	888	893	Right-handed 310
Helix 43	AE7	D	908	918	Right-handed alpha
Helix 44	AE8	D	928	934	Right-handed alpha
Helix 45	AE9	D	935	939	Right-handed 310

There are 16 sheets in PDB entry 5VIO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	675	first strand
Strand 2	A	693	699	anti-parallel
Strand 3	A	685	688	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	675	first strand
Strand 2	A	693	699	anti-parallel
Strand 3	A	705	712	anti-parallel
Strand 4	A	749	755	anti-parallel
Strand 5	A	740	746	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	759	761	first strand
Strand 2	A	809	812	anti-parallel
Strand 3	A	818	820	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	800	first strand
Strand 2	A	827	828	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	675	first strand
Strand 2	B	693	699	anti-parallel
Strand 3	B	685	688	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	675	first strand
Strand 2	B	693	699	anti-parallel
Strand 3	B	705	712	anti-parallel
Strand 4	B	749	755	anti-parallel
Strand 5	B	740	746	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	759	761	first strand
Strand 2	B	809	812	anti-parallel
Strand 3	B	818	820	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	799	800	first strand
Strand 2	B	827	828	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	675	first strand
Strand 2	C	693	699	anti-parallel
Strand 3	C	685	688	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	675	first strand
Strand 2	C	693	699	anti-parallel
Strand 3	C	705	712	anti-parallel
Strand 4	C	749	755	anti-parallel
Strand 5	C	740	746	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	761	first strand
Strand 2	C	809	812	anti-parallel
Strand 3	C	818	820	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	799	800	first strand
Strand 2	C	827	828	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	673	675	first strand
Strand 2	D	693	699	anti-parallel
Strand 3	D	685	688	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	673	675	first strand
Strand 2	D	693	699	anti-parallel
Strand 3	D	705	712	anti-parallel
Strand 4	D	749	755	anti-parallel
Strand 5	D	740	746	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	759	761	first strand
Strand 2	D	809	812	anti-parallel
Strand 3	D	818	820	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	799	800	first strand
Strand 2	D	827	828	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VIO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VIO