Analysis of interatomic Contacts of Structural Units in PDB entry:
5VIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VIP entry

There are 4 chains in PDB entry 5VIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6TRP 268
B
 ALA 5ASP 262
C
 PHE 5TRP 268
D
 ARG 11GLY 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5VIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
55 59Right-handed 310
Helix 3
AA3
A
64 82Right-handed alpha
Helix 4
AA4
A
103 109Right-handed alpha
Helix 5
AA5
A
110 128Right-handed alpha
Helix 6
AA6
A
142 148Right-handed alpha
Helix 7
AA7
A
169 177Right-handed alpha
Helix 8
AA8
A
184 189Right-handed alpha
Helix 9
AA9
A
190 195Right-handed 310
Helix 10
AB1
A
197 204Right-handed alpha
Helix 11
AB2
A
220 239Right-handed alpha
Helix 12
AB3
A
255 268Right-handed alpha
Helix 13
AB4
B
7 12Right-handed alpha
Helix 14
AB5
B
17 26Right-handed alpha
Helix 15
AB6
B
80 84Right-handed 310
Helix 16
AB7
B
86 106Right-handed alpha
Helix 17
AB8
B
122 124Right-handed 310
Helix 18
AB9
B
125 144Right-handed alpha
Helix 19
AC1
B
161 170Right-handed alpha
Helix 20
AC2
B
185 194Right-handed alpha
Helix 21
AC3
B
211 218Right-handed alpha
Helix 22
AC4
B
228 243Right-handed alpha
Helix 23
AC5
B
248 251Right-handed 310
Helix 24
AC6
B
252 262Right-handed alpha
Helix 25
AC7
C
7 18Right-handed alpha
Helix 26
AC8
C
55 59Right-handed 310
Helix 27
AC9
C
64 82Right-handed alpha
Helix 28
AD1
C
103 110Right-handed alpha
Helix 29
AD2
C
110 128Right-handed alpha
Helix 30
AD3
C
142 148Right-handed alpha
Helix 31
AD4
C
185 189Right-handed alpha
Helix 32
AD5
C
190 195Right-handed 310
Helix 33
AD6
C
197 203Right-handed alpha
Helix 34
AD7
C
220 240Right-handed alpha
Helix 35
AD8
C
245 249Right-handed 310
Helix 36
AD9
C
251 253Right-handed 310
Helix 37
AE1
C
254 268Right-handed alpha
Helix 38
AE2
D
17 26Right-handed alpha
Helix 39
AE3
D
36 40Right-handed 310
Helix 40
AE4
D
46 50Right-handed 310
Helix 41
AE5
D
80 84Right-handed 310
Helix 42
AE6
D
86 106Right-handed alpha
Helix 43
AE7
D
122 124Right-handed 310
Helix 44
AE8
D
125 144Right-handed alpha
Helix 45
AE9
D
161 170Right-handed alpha
Helix 46
AF1
D
185 194Right-handed alpha
Helix 47
AF2
D
202 211Right-handed alpha
Helix 48
AF3
D
211 218Right-handed alpha
Helix 49
AF4
D
228 243Right-handed alpha
Helix 50
AF5
D
248 251Right-handed 310
Helix 51
AF6
D
252 262Right-handed alpha
Helix 52
AF7
D
270 278Right-handed alpha
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There are 7 sheets in PDB entry 5VIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 37first strand
Strand 2
A
40 47anti-parallel
Strand 3
A
90 97parallel
Strand 4
A
132 141parallel
Strand 5
A
164 166parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 37first strand
Strand 2
A
40 47anti-parallel
Strand 3
A
90 97parallel
Strand 4
A
132 141parallel
Strand 5
A
154 158parallel
Strand 6
A
209 211parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
59 66anti-parallel
Strand 3
B
69 76anti-parallel
Strand 4
B
111 115parallel
Strand 5
B
150 153parallel
Strand 6
B
172 176parallel
Strand 7
B
223 225parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
181 182parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 37first strand
Strand 2
C
40 47anti-parallel
Strand 3
C
90 97parallel
Strand 4
C
132 141parallel
Strand 5
C
164 166parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 37first strand
Strand 2
C
40 47anti-parallel
Strand 3
C
90 97parallel
Strand 4
C
132 141parallel
Strand 5
C
154 158parallel
Strand 6
C
209 211parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 34first strand
Strand 2
D
59 66anti-parallel
Strand 3
D
69 76anti-parallel
Strand 4
D
111 115parallel
Strand 5
D
150 153parallel
Strand 6
D
172 176parallel
Strand 7
D
223 225parallel
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