Analysis of interatomic Contacts of Structural Units in PDB entry:
5VIS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VIS entry

There are 2 chains in PDB entry 5VIS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ARG 272
B
 ASN -1GLU 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5VIS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 39Right-handed alpha
Helix 2
AA2
A
59 78Right-handed alpha
Helix 3
AA3
A
89 99Right-handed alpha
Helix 4
AA4
A
115 122Right-handed alpha
Helix 5
AA5
A
148 167Right-handed alpha
Helix 6
AA6
A
170 172Right-handed 310
Helix 7
AA7
A
180 184Right-handed 310
Helix 8
AA8
A
188 197Right-handed alpha
Helix 9
AA9
A
198 205Right-handed 310
Helix 10
AB1
A
215 220Right-handed 310
Helix 11
AB2
A
225 228Right-handed 310
Helix 12
AB3
A
229 243Right-handed alpha
Helix 13
AB4
A
252 268Right-handed alpha
Helix 14
AB5
B
22 39Right-handed alpha
Helix 15
AB6
B
59 78Right-handed alpha
Helix 16
AB7
B
89 99Right-handed alpha
Helix 17
AB8
B
115 122Right-handed alpha
Helix 18
AB9
B
148 167Right-handed alpha
Helix 19
AC1
B
170 172Right-handed 310
Helix 20
AC2
B
180 184Right-handed 310
Helix 21
AC3
B
188 197Right-handed alpha
Helix 22
AC4
B
198 205Right-handed 310
Helix 23
AC5
B
215 219Right-handed 310
Helix 24
AC6
B
225 228Right-handed 310
Helix 25
AC7
B
229 243Right-handed alpha
Helix 26
AC8
B
252 268Right-handed alpha
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There are 2 sheets in PDB entry 5VIS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
43 47parallel
Strand 3
A
82 86parallel
Strand 4
A
103 106parallel
Strand 5
A
126 130parallel
Strand 6
A
174 177parallel
Strand 7
A
207 210parallel
Strand 8
A
247 250parallel
Strand 9
A
5 11parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 11first strand
Strand 2
B
43 47parallel
Strand 3
B
83 86parallel
Strand 4
B
103 106parallel
Strand 5
B
126 130parallel
Strand 6
B
174 177parallel
Strand 7
B
207 210parallel
Strand 8
B
247 250parallel
Strand 9
B
5 11parallel
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