Analysis of interatomic Contacts of Structural Units in PDB entry:
5VIU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VIU entry

There are 2 chains in PDB entry 5VIU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4PHE 411
B
 THR 4PHE 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5VIU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 18Right-handed alpha
Helix 2
AA2
A
49 54Right-handed alpha
Helix 3
AA3
A
61 73Right-handed alpha
Helix 4
AA4
A
86 99Right-handed alpha
Helix 5
AA5
A
108 127Right-handed alpha
Helix 6
AA6
A
178 190Right-handed alpha
Helix 7
AA7
A
213 225Right-handed alpha
Helix 8
AA8
A
245 251Right-handed 310
Helix 9
AA9
A
261 265Right-handed 310
Helix 10
AB1
A
276 281Right-handed alpha
Helix 11
AB2
A
295 312Right-handed alpha
Helix 12
AB3
A
313 334Right-handed alpha
Helix 13
AB4
A
360 372Right-handed alpha
Helix 14
AB5
A
393 411Right-handed alpha
Helix 15
AB6
B
6 18Right-handed alpha
Helix 16
AB7
B
49 54Right-handed alpha
Helix 17
AB8
B
61 73Right-handed alpha
Helix 18
AB9
B
86 99Right-handed alpha
Helix 19
AC1
B
108 127Right-handed alpha
Helix 20
AC2
B
131 135Right-handed 310
Helix 21
AC3
B
178 190Right-handed alpha
Helix 22
AC4
B
213 225Right-handed alpha
Helix 23
AC5
B
245 251Right-handed 310
Helix 24
AC6
B
260 265Right-handed 310
Helix 25
AC7
B
276 281Right-handed alpha
Helix 26
AC8
B
295 312Right-handed alpha
Helix 27
AC9
B
313 334Right-handed alpha
Helix 28
AD1
B
360 372Right-handed alpha
Helix 29
AD2
B
393 411Right-handed alpha
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There are 6 sheets in PDB entry 5VIU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
44 47parallel
Strand 3
A
36 39anti-parallel
Strand 4
A
25 33anti-parallel
Strand 5
B
82 84parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
B
25 33parallel
Strand 3
B
36 39anti-parallel
Strand 4
B
44 47anti-parallel
Strand 5
B
374 375parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 106first strand
Strand 2
A
271 275anti-parallel
Strand 3
A
256 259anti-parallel
Strand 4
A
228 233parallel
Strand 5
A
193 198parallel
Strand 6
A
136 139parallel
Strand 7
A
171 173parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 345first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
383 386anti-parallel
Strand 4
A
378 379anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 106first strand
Strand 2
B
271 275anti-parallel
Strand 3
B
256 259anti-parallel
Strand 4
B
228 232parallel
Strand 5
B
193 198parallel
Strand 6
B
136 140parallel
Strand 7
B
171 174parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 345first strand
Strand 2
B
348 353anti-parallel
Strand 3
B
383 386anti-parallel
Strand 4
B
378 379anti-parallel
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