Analysis of interatomic Contacts of Structural Units in PDB entry:
5VJ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VJ0 entry

There are 4 chains in PDB entry 5VJ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LEU 299
B	SER 2	LEU 299
C	SER 2	LEU 299
D	HIS 0	LEU 299

There are 51 helices in PDB entry 5VJ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	48	Right-handed alpha
Helix 2	AA2	A	49	52	Right-handed 310
Helix 3	AA3	A	60	69	Right-handed alpha
Helix 4	AA4	A	82	86	Right-handed 310
Helix 5	AA5	A	102	118	Right-handed alpha
Helix 6	AA6	A	132	136	Right-handed 310
Helix 7	AA7	A	150	159	Right-handed alpha
Helix 8	AA8	A	179	185	Right-handed alpha
Helix 9	AA9	A	187	196	Right-handed alpha
Helix 10	AB1	A	214	220	Right-handed alpha
Helix 11	AB2	A	254	266	Right-handed alpha
Helix 12	AB3	A	274	278	Right-handed 310
Helix 13	AB4	A	292	298	Right-handed alpha
Helix 14	AB5	B	28	48	Right-handed alpha
Helix 15	AB6	B	60	69	Right-handed alpha
Helix 16	AB7	B	102	118	Right-handed alpha
Helix 17	AB8	B	132	136	Right-handed 310
Helix 18	AB9	B	150	159	Right-handed alpha
Helix 19	AC1	B	179	185	Right-handed alpha
Helix 20	AC2	B	187	196	Right-handed alpha
Helix 21	AC3	B	206	210	Right-handed 310
Helix 22	AC4	B	214	220	Right-handed alpha
Helix 23	AC5	B	254	266	Right-handed alpha
Helix 24	AC6	B	274	278	Right-handed 310
Helix 25	AC7	B	292	298	Right-handed alpha
Helix 26	AC8	C	26	28	Right-handed 310
Helix 27	AC9	C	29	48	Right-handed alpha
Helix 28	AD1	C	60	68	Right-handed alpha
Helix 29	AD2	C	102	118	Right-handed alpha
Helix 30	AD3	C	132	136	Right-handed 310
Helix 31	AD4	C	150	159	Right-handed alpha
Helix 32	AD5	C	179	185	Right-handed alpha
Helix 33	AD6	C	187	196	Right-handed alpha
Helix 34	AD7	C	206	210	Right-handed 310
Helix 35	AD8	C	214	220	Right-handed alpha
Helix 36	AD9	C	254	266	Right-handed alpha
Helix 37	AE1	C	274	278	Right-handed 310
Helix 38	AE2	C	292	298	Right-handed alpha
Helix 39	AE3	D	26	28	Right-handed 310
Helix 40	AE4	D	29	48	Right-handed alpha
Helix 41	AE5	D	60	68	Right-handed alpha
Helix 42	AE6	D	82	86	Right-handed 310
Helix 43	AE7	D	102	118	Right-handed alpha
Helix 44	AE8	D	132	136	Right-handed 310
Helix 45	AE9	D	150	159	Right-handed alpha
Helix 46	AF1	D	179	185	Right-handed alpha
Helix 47	AF2	D	187	196	Right-handed alpha
Helix 48	AF3	D	214	220	Right-handed alpha
Helix 49	AF4	D	254	266	Right-handed alpha
Helix 50	AF5	D	274	278	Right-handed 310
Helix 51	AF6	D	292	297	Right-handed alpha

There are 16 sheets in PDB entry 5VJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	59	first strand
Strand 2	A	94	100	anti-parallel
Strand 3	A	15	23	anti-parallel
Strand 4	A	121	130	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	244	252	anti-parallel
Strand 3	A	169	178	anti-parallel
Strand 4	A	280	282	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	238	first strand
Strand 2	A	244	252	anti-parallel
Strand 3	A	169	178	anti-parallel
Strand 4	A	286	290	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	226	227	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	59	first strand
Strand 2	B	94	100	anti-parallel
Strand 3	B	15	23	anti-parallel
Strand 4	B	121	130	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	244	252	anti-parallel
Strand 3	B	169	178	anti-parallel
Strand 4	B	280	282	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	238	first strand
Strand 2	B	244	252	anti-parallel
Strand 3	B	169	178	anti-parallel
Strand 4	B	286	290	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	223	first strand
Strand 2	B	226	227	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	59	first strand
Strand 2	C	94	100	anti-parallel
Strand 3	C	15	23	anti-parallel
Strand 4	C	121	130	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	232	first strand
Strand 2	C	244	252	anti-parallel
Strand 3	C	169	178	anti-parallel
Strand 4	C	280	282	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	238	first strand
Strand 2	C	244	252	anti-parallel
Strand 3	C	169	178	anti-parallel
Strand 4	C	286	290	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	226	227	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	59	first strand
Strand 2	D	94	100	anti-parallel
Strand 3	D	15	23	anti-parallel
Strand 4	D	121	130	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	232	first strand
Strand 2	D	244	252	anti-parallel
Strand 3	D	169	178	anti-parallel
Strand 4	D	280	282	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	238	first strand
Strand 2	D	244	252	anti-parallel
Strand 3	D	169	178	anti-parallel
Strand 4	D	286	290	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	223	first strand
Strand 2	D	226	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VJ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VJ0