Analysis of interatomic Contacts of Structural Units in PDB entry:
5VJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VJ1 entry

There are 8 chains in PDB entry 5VJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 7	TRP 554
C	MET 1	GLY 97
D	ASP 3	TYR 278
E	ALA 6	TRP 268
I	PRO 7	TRP 554
K	MET 1	GLY 97
L	ASP 3	TYR 278
M	ALA 6	TRP 268

There are128 helices in PDB entry 5VJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	11	Right-handed 310
Helix 2	AA2	A	12	24	Right-handed alpha
Helix 3	AA3	A	35	37	Right-handed 310
Helix 4	AA4	A	38	47	Right-handed alpha
Helix 5	AA5	A	63	70	Right-handed alpha
Helix 6	AA6	A	90	99	Right-handed alpha
Helix 7	AA7	A	113	123	Right-handed alpha
Helix 8	AA8	A	134	141	Right-handed alpha
Helix 9	AA9	A	165	169	Right-handed 310
Helix 10	AB1	A	171	181	Right-handed alpha
Helix 11	AB2	A	196	200	Right-handed 310
Helix 12	AB3	A	229	233	Right-handed 310
Helix 13	AB4	A	234	248	Right-handed alpha
Helix 14	AB5	A	262	272	Right-handed alpha
Helix 15	AB6	A	276	280	Right-handed 310
Helix 16	AB7	A	294	296	Right-handed 310
Helix 17	AB8	A	297	303	Right-handed alpha
Helix 18	AB9	A	318	324	Right-handed alpha
Helix 19	AC1	A	340	351	Right-handed alpha
Helix 20	AC2	A	381	386	Right-handed alpha
Helix 21	AC3	A	396	402	Right-handed alpha
Helix 22	AC4	A	436	444	Right-handed alpha
Helix 23	AC5	A	455	459	Right-handed 310
Helix 24	AC6	A	471	474	Right-handed 310
Helix 25	AC7	A	476	488	Right-handed alpha
Helix 26	AC8	A	493	497	Right-handed 310
Helix 27	AC9	A	498	500	Right-handed 310
Helix 28	AD1	A	501	508	Right-handed alpha
Helix 29	AD2	A	513	518	Right-handed 310
Helix 30	AD3	A	520	524	Right-handed 310
Helix 31	AD4	A	525	529	Right-handed 310
Helix 32	AD5	A	533	541	Right-handed alpha
Helix 33	AD6	A	548	552	Right-handed 310
Helix 34	AD7	C	51	63	Right-handed alpha
Helix 35	AD8	C	81	96	Right-handed alpha
Helix 36	AD9	D	4	8	Right-handed alpha
Helix 37	AE1	D	17	26	Right-handed alpha
Helix 38	AE2	D	46	50	Right-handed 310
Helix 39	AE3	D	80	84	Right-handed 310
Helix 40	AE4	D	86	105	Right-handed alpha
Helix 41	AE5	D	125	144	Right-handed alpha
Helix 42	AE6	D	161	169	Right-handed alpha
Helix 43	AE7	D	185	194	Right-handed alpha
Helix 44	AE8	D	202	211	Right-handed alpha
Helix 45	AE9	D	211	218	Right-handed alpha
Helix 46	AF1	D	228	243	Right-handed alpha
Helix 47	AF2	D	248	251	Right-handed 310
Helix 48	AF3	D	252	263	Right-handed alpha
Helix 49	AF4	D	270	277	Right-handed alpha
Helix 50	AF5	E	7	18	Right-handed alpha
Helix 51	AF6	E	55	59	Right-handed 310
Helix 52	AF7	E	64	82	Right-handed alpha
Helix 53	AF8	E	103	109	Right-handed alpha
Helix 54	AF9	E	110	129	Right-handed alpha
Helix 55	AG1	E	142	148	Right-handed alpha
Helix 56	AG2	E	169	178	Right-handed alpha
Helix 57	AG3	E	180	188	Right-handed alpha
Helix 58	AG4	E	189	190	Right-handed 310
Helix 59	AG5	E	191	195	Right-handed 310
Helix 60	AG6	E	197	203	Right-handed alpha
Helix 61	AG7	E	220	239	Right-handed alpha
Helix 62	AG8	E	245	250	Right-handed 310
Helix 63	AG9	E	251	253	Right-handed 310
Helix 64	AH1	E	254	268	Right-handed alpha
Helix 65	AH2	I	8	11	Right-handed 310
Helix 66	AH3	I	12	24	Right-handed alpha
Helix 67	AH4	I	35	37	Right-handed 310
Helix 68	AH5	I	38	47	Right-handed alpha
Helix 69	AH6	I	63	72	Right-handed alpha
Helix 70	AH7	I	90	99	Right-handed alpha
Helix 71	AH8	I	113	119	Right-handed alpha
Helix 72	AH9	I	134	141	Right-handed alpha
Helix 73	AI1	I	165	169	Right-handed 310
Helix 74	AI2	I	171	181	Right-handed alpha
Helix 75	AI3	I	196	200	Right-handed 310
Helix 76	AI4	I	229	233	Right-handed 310
Helix 77	AI5	I	234	248	Right-handed alpha
Helix 78	AI6	I	248	253	Right-handed alpha
Helix 79	AI7	I	262	272	Right-handed alpha
Helix 80	AI8	I	276	280	Right-handed 310
Helix 81	AI9	I	294	296	Right-handed 310
Helix 82	AJ1	I	297	303	Right-handed alpha
Helix 83	AJ2	I	318	324	Right-handed alpha
Helix 84	AJ3	I	340	351	Right-handed alpha
Helix 85	AJ4	I	381	386	Right-handed alpha
Helix 86	AJ5	I	396	402	Right-handed alpha
Helix 87	AJ6	I	436	444	Right-handed alpha
Helix 88	AJ7	I	455	459	Right-handed 310
Helix 89	AJ8	I	471	474	Right-handed 310
Helix 90	AJ9	I	476	487	Right-handed alpha
Helix 91	AK1	I	493	497	Right-handed 310
Helix 92	AK2	I	498	500	Right-handed 310
Helix 93	AK3	I	501	508	Right-handed alpha
Helix 94	AK4	I	513	518	Right-handed 310
Helix 95	AK5	I	520	524	Right-handed 310
Helix 96	AK6	I	525	529	Right-handed 310
Helix 97	AK7	I	533	541	Right-handed alpha
Helix 98	AK8	I	548	552	Right-handed 310
Helix 99	AK9	K	51	63	Right-handed alpha
Helix 100	AL1	K	81	97	Right-handed alpha
Helix 101	AL2	L	4	8	Right-handed alpha
Helix 102	AL3	L	17	26	Right-handed alpha
Helix 103	AL4	L	46	50	Right-handed 310
Helix 104	AL5	L	79	84	Right-handed 310
Helix 105	AL6	L	86	105	Right-handed alpha
Helix 106	AL7	L	125	144	Right-handed alpha
Helix 107	AL8	L	161	170	Right-handed alpha
Helix 108	AL9	L	185	194	Right-handed alpha
Helix 109	AM1	L	202	211	Right-handed alpha
Helix 110	AM2	L	211	218	Right-handed alpha
Helix 111	AM3	L	228	243	Right-handed alpha
Helix 112	AM4	L	248	251	Right-handed 310
Helix 113	AM5	L	252	263	Right-handed alpha
Helix 114	AM6	L	270	278	Right-handed alpha
Helix 115	AM7	M	7	18	Right-handed alpha
Helix 116	AM8	M	55	59	Right-handed 310
Helix 117	AM9	M	64	82	Right-handed alpha
Helix 118	AN1	M	103	109	Right-handed alpha
Helix 119	AN2	M	110	129	Right-handed alpha
Helix 120	AN3	M	142	148	Right-handed alpha
Helix 121	AN4	M	169	178	Right-handed alpha
Helix 122	AN5	M	180	191	Right-handed alpha
Helix 123	AN6	M	192	195	Right-handed 310
Helix 124	AN7	M	197	203	Right-handed alpha
Helix 125	AN8	M	220	239	Right-handed alpha
Helix 126	AN9	M	245	250	Right-handed 310
Helix 127	AO1	M	251	253	Right-handed 310
Helix 128	AO2	M	254	268	Right-handed alpha

There are 16 sheets in PDB entry 5VJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	212	215	parallel
Strand 3	A	185	190	parallel
Strand 4	A	149	153	parallel
Strand 5	A	52	55	parallel
Strand 6	A	81	88	parallel
Strand 7	A	102	110	parallel
Strand 8	A	127	131	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	156	158	anti-parallel
Strand 3	A	192	194	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	310	first strand
Strand 2	A	288	290	parallel
Strand 3	A	256	259	parallel
Strand 4	A	354	357	parallel
Strand 5	A	416	420	parallel
Strand 6	A	461	464	parallel
Strand 7	A	467	469	anti-parallel
Strand 8	A	511	512	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	369	first strand
Strand 2	A	361	363	anti-parallel
Strand 3	A	432	433	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	9	first strand
Strand 2	C	39	46	anti-parallel
Strand 3	C	71	77	parallel
Strand 4	C	28	34	anti-parallel
Strand 5	C	18	20	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	34	first strand
Strand 2	D	59	65	anti-parallel
Strand 3	D	70	76	anti-parallel
Strand 4	D	111	115	parallel
Strand 5	D	149	153	parallel
Strand 6	D	172	175	parallel
Strand 7	D	223	224	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	36	first strand
Strand 2	E	41	47	anti-parallel
Strand 3	E	90	97	parallel
Strand 4	E	132	141	parallel
Strand 5	E	164	166	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	36	first strand
Strand 2	E	41	47	anti-parallel
Strand 3	E	90	97	parallel
Strand 4	E	132	141	parallel
Strand 5	E	154	159	parallel
Strand 6	E	209	212	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	33	34	first strand
Strand 2	I	212	215	parallel
Strand 3	I	185	190	parallel
Strand 4	I	149	153	parallel
Strand 5	I	52	55	parallel
Strand 6	I	81	88	parallel
Strand 7	I	102	110	parallel
Strand 8	I	127	131	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	163	164	first strand
Strand 2	I	156	158	anti-parallel
Strand 3	I	192	194	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	308	310	first strand
Strand 2	I	288	290	parallel
Strand 3	I	256	259	parallel
Strand 4	I	354	357	parallel
Strand 5	I	416	420	parallel
Strand 6	I	461	464	parallel
Strand 7	I	467	469	anti-parallel
Strand 8	I	511	512	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	361	362	first strand
Strand 2	I	368	369	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2	9	first strand
Strand 2	K	39	46	anti-parallel
Strand 3	K	71	77	parallel
Strand 4	K	28	34	anti-parallel
Strand 5	K	18	20	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	32	34	first strand
Strand 2	L	59	65	anti-parallel
Strand 3	L	70	76	anti-parallel
Strand 4	L	111	115	parallel
Strand 5	L	149	153	parallel
Strand 6	L	172	175	parallel
Strand 7	L	223	224	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	30	36	first strand
Strand 2	M	41	47	anti-parallel
Strand 3	M	90	97	parallel
Strand 4	M	132	141	parallel
Strand 5	M	164	166	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	30	36	first strand
Strand 2	M	41	47	anti-parallel
Strand 3	M	90	97	parallel
Strand 4	M	132	141	parallel
Strand 5	M	154	159	parallel
Strand 6	M	209	212	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VJ1