Analysis of interatomic Contacts of Structural Units in PDB entry:
5VJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VJ4 entry

There are 2 chains in PDB entry 5VJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 162LYS 436
B
 GLU 163ALA 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5VJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
174 185Right-handed alpha
Helix 2
AA2
A
187 199Right-handed alpha
Helix 3
AA3
A
202 212Right-handed alpha
Helix 4
AA4
A
214 222Right-handed alpha
Helix 5
AA5
A
222 242Right-handed alpha
Helix 6
AA6
A
245 272Right-handed alpha
Helix 7
AA7
A
276 285Right-handed alpha
Helix 8
AA8
A
287 293Right-handed alpha
Helix 9
AA9
A
293 300Right-handed alpha
Helix 10
AB1
A
301 310Right-handed 310
Helix 11
AB2
A
312 327Right-handed alpha
Helix 12
AB3
A
332 372Right-handed alpha
Helix 13
AB4
A
377 405Right-handed alpha
Helix 14
AB5
A
414 436Right-handed alpha
Helix 15
AB6
B
174 185Right-handed alpha
Helix 16
AB7
B
187 199Right-handed alpha
Helix 17
AB8
B
202 213Right-handed alpha
Helix 18
AB9
B
214 222Right-handed alpha
Helix 19
AC1
B
222 242Right-handed alpha
Helix 20
AC2
B
245 272Right-handed alpha
Helix 21
AC3
B
276 285Right-handed alpha
Helix 22
AC4
B
287 293Right-handed alpha
Helix 23
AC5
B
293 300Right-handed alpha
Helix 24
AC6
B
301 306Right-handed 310
Helix 25
AC7
B
307 311Right-handed 310
Helix 26
AC8
B
312 327Right-handed alpha
Helix 27
AC9
B
332 344Right-handed alpha
Helix 28
AD1
B
344 372Right-handed alpha
Helix 29
AD2
B
377 405Right-handed alpha
Helix 30
AD3
B
414 435Right-handed alpha
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There are no sheets in PDB entry 5VJ4
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il