Analysis of interatomic Contacts of Structural Units in PDB entry:
5VJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VJ7 entry

There are 2 chains in PDB entry 5VJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5LYS 473
B
 MET 1LEU 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5VJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed alpha
Helix 2
AA2
A
31 40Right-handed alpha
Helix 3
AA3
A
50 56Right-handed alpha
Helix 4
AA4
A
61 72Right-handed alpha
Helix 5
AA5
A
75 91Right-handed alpha
Helix 6
AA6
A
93 101Right-handed alpha
Helix 7
AA7
A
102 105Right-handed 310
Helix 8
AA8
A
106 111Right-handed alpha
Helix 9
AA9
A
112 115Right-handed 310
Helix 10
AB1
A
121 136Right-handed alpha
Helix 11
AB2
A
137 149Right-handed alpha
Helix 12
AB3
A
163 176Right-handed alpha
Helix 13
AB4
A
191 196Right-handed alpha
Helix 14
AB5
A
204 217Right-handed alpha
Helix 15
AB6
A
232 238Right-handed alpha
Helix 16
AB7
A
268 277Right-handed alpha
Helix 17
AB8
A
279 283Right-handed 310
Helix 18
AB9
A
302 314Right-handed alpha
Helix 19
AC1
A
326 330Right-handed 310
Helix 20
AC2
A
333 344Right-handed alpha
Helix 21
AC3
A
411 416Right-handed 310
Helix 22
AC4
A
444 449Right-handed alpha
Helix 23
AC5
A
452 471Right-handed alpha
Helix 24
AC6
B
21 26Right-handed alpha
Helix 25
AC7
B
67 77Right-handed alpha
Helix 26
AC8
B
110 124Right-handed alpha
Helix 27
AC9
B
135 139Right-handed 310
Helix 28
AD1
B
143 147Right-handed 310
Helix 29
AD2
B
173 181Right-handed alpha
Helix 30
AD3
B
197 210Right-handed alpha
Helix 31
AD4
B
244 248Right-handed alpha
Helix 32
AD5
B
257 264Right-handed alpha
Helix 33
AD6
B
268 281Right-handed alpha
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There are 8 sheets in PDB entry 5VJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 223first strand
Strand 2
A
179 184parallel
Strand 3
A
156 160parallel
Strand 4
A
242 245parallel
Strand 5
A
440 442parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
406 407anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
399 402parallel
Strand 3
A
295 299parallel
Strand 4
A
318 322parallel
Strand 5
A
346 348parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 358first strand
Strand 2
A
364 373anti-parallel
Strand 3
A
387 396anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
58 64anti-parallel
Strand 3
B
14 20anti-parallel
Strand 4
B
2 11anti-parallel
Strand 5
B
82 83anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
33 37anti-parallel
Strand 3
B
85 90anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 154first strand
Strand 2
B
127 133parallel
Strand 3
B
101 107parallel
Strand 4
B
191 195parallel
Strand 5
B
215 218parallel
Strand 6
B
250 252anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 237first strand
Strand 2
B
240 243anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il