Analysis of interatomic Contacts of Structural Units in PDB entry:
5VJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VJC entry

There are 2 chains in PDB entry 5VJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1145ARG 1406
B
 SER 1145GLY 1390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5VJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1152 1163Right-handed alpha
Helix 2
AA2
A
1175 1189Right-handed alpha
Helix 3
AA3
A
1192 1200Right-handed alpha
Helix 4
AA4
A
1203 1218Right-handed alpha
Helix 5
AA5
A
1221 1228Right-handed alpha
Helix 6
AA6
A
1228 1240Right-handed alpha
Helix 7
AA7
A
1244 1265Right-handed alpha
Helix 8
AA8
A
1270 1283Right-handed alpha
Helix 9
AA9
A
1289 1307Right-handed alpha
Helix 10
AB1
A
1308 1319Right-handed alpha
Helix 11
AB2
A
1320 1322Right-handed 310
Helix 12
AB3
A
1324 1343Right-handed alpha
Helix 13
AB4
A
1344 1347Right-handed 310
Helix 14
AB5
A
1348 1358Right-handed alpha
Helix 15
AB6
A
1359 1361Right-handed 310
Helix 16
AB7
A
1363 1382Right-handed alpha
Helix 17
AB8
A
1384 1389Right-handed alpha
Helix 18
AB9
A
1393 1405Right-handed alpha
Helix 19
AC1
B
1152 1163Right-handed alpha
Helix 20
AC2
B
1175 1189Right-handed alpha
Helix 21
AC3
B
1192 1200Right-handed alpha
Helix 22
AC4
B
1203 1218Right-handed alpha
Helix 23
AC5
B
1221 1228Right-handed alpha
Helix 24
AC6
B
1228 1240Right-handed alpha
Helix 25
AC7
B
1244 1265Right-handed alpha
Helix 26
AC8
B
1270 1283Right-handed alpha
Helix 27
AC9
B
1289 1304Right-handed alpha
Helix 28
AD1
B
1308 1319Right-handed alpha
Helix 29
AD2
B
1320 1322Right-handed 310
Helix 30
AD3
B
1324 1343Right-handed alpha
Helix 31
AD4
B
1344 1347Right-handed 310
Helix 32
AD5
B
1348 1358Right-handed alpha
Helix 33
AD6
B
1363 1382Right-handed alpha
Helix 34
AD7
B
1384 1390Right-handed alpha
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There are no sheets in PDB entry 5VJC
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