Analysis of interatomic Contacts of Structural Units in PDB entry:
5VJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VJE entry

There are 2 chains in PDB entry 5VJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 358
B
 SER 1ASP 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5VJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
14 27Right-handed alpha
Helix 3
AA3
A
38 53Right-handed alpha
Helix 4
AA4
A
61 70Right-handed alpha
Helix 5
AA5
A
79 97Right-handed alpha
Helix 6
AA6
A
98 101Right-handed 310
Helix 7
AA7
A
112 114Right-handed 310
Helix 8
AA8
A
115 134Right-handed alpha
Helix 9
AA9
A
149 166Right-handed alpha
Helix 10
AB1
A
198 211Right-handed alpha
Helix 11
AB2
A
238 253Right-handed alpha
Helix 12
AB3
A
270 280Right-handed alpha
Helix 13
AB4
A
288 306Right-handed alpha
Helix 14
AB5
A
307 310Right-handed 310
Helix 15
AB6
A
324 329Right-handed alpha
Helix 16
AB7
A
329 352Right-handed alpha
Helix 17
AB8
B
2 6Right-handed 310
Helix 18
AB9
B
14 27Right-handed alpha
Helix 19
AC1
B
38 53Right-handed alpha
Helix 20
AC2
B
61 70Right-handed alpha
Helix 21
AC3
B
79 97Right-handed alpha
Helix 22
AC4
B
98 101Right-handed 310
Helix 23
AC5
B
112 114Right-handed 310
Helix 24
AC6
B
115 134Right-handed alpha
Helix 25
AC7
B
149 166Right-handed alpha
Helix 26
AC8
B
198 211Right-handed alpha
Helix 27
AC9
B
238 253Right-handed alpha
Helix 28
AD1
B
270 280Right-handed alpha
Helix 29
AD2
B
288 306Right-handed alpha
Helix 30
AD3
B
307 310Right-handed 310
Helix 31
AD4
B
324 329Right-handed alpha
Helix 32
AD5
B
329 352Right-handed alpha
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There are 4 sheets in PDB entry 5VJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
103 108parallel
Strand 3
A
140 143parallel
Strand 4
A
170 175parallel
Strand 5
A
216 220parallel
Strand 6
A
261 263parallel
Strand 7
A
282 287parallel
Strand 8
A
31 35parallel
Strand 9
A
56 60parallel
Strand 10
A
103 108parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
319 323anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
103 108parallel
Strand 3
B
140 143parallel
Strand 4
B
170 175parallel
Strand 5
B
216 220parallel
Strand 6
B
261 263parallel
Strand 7
B
282 287parallel
Strand 8
B
31 35parallel
Strand 9
B
56 60parallel
Strand 10
B
103 108parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 316first strand
Strand 2
B
319 323anti-parallel
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