Analysis of interatomic Contacts of Structural Units in PDB entry:
5VJQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VJQ entry

There are 7 chains in PDB entry 5VJQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	ARG 213
B	ASP 1	ASN 212
I	LYS 1	LEU 129
C	ASP 1	ARG 213
D	ASP 1	GLU 213
J	LYS 1	LEU 129
E	ASP 1	SER 203

There are 68 helices in PDB entry 5VJQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	61	64	Right-handed 310
Helix 3	AA3	A	73	75	Right-handed 310
Helix 4	AA4	A	86	90	Right-handed 310
Helix 5	AA5	A	156	158	Right-handed 310
Helix 6	AA6	A	200	203	Right-handed 310
Helix 7	AA7	B	79	83	Right-handed 310
Helix 8	AA8	B	121	127	Right-handed alpha
Helix 9	AA9	B	183	187	Right-handed alpha
Helix 10	AB1	I	4	15	Right-handed alpha
Helix 11	AB2	I	19	23	Right-handed 310
Helix 12	AB3	I	24	37	Right-handed alpha
Helix 13	AB4	I	79	85	Right-handed 310
Helix 14	AB5	I	88	100	Right-handed alpha
Helix 15	AB6	I	103	107	Right-handed 310
Helix 16	AB7	I	108	115	Right-handed alpha
Helix 17	AB8	I	119	125	Right-handed 310
Helix 18	AB9	C	28	32	Right-handed 310
Helix 19	AC1	C	61	64	Right-handed 310
Helix 20	AC2	C	73	75	Right-handed 310
Helix 21	AC3	C	86	90	Right-handed 310
Helix 22	AC4	C	156	158	Right-handed 310
Helix 23	AC5	C	200	203	Right-handed 310
Helix 24	AC6	D	79	83	Right-handed 310
Helix 25	AC7	D	121	127	Right-handed alpha
Helix 26	AC8	D	183	188	Right-handed alpha
Helix 27	AC9	J	4	15	Right-handed alpha
Helix 28	AD1	J	19	23	Right-handed 310
Helix 29	AD2	J	24	37	Right-handed alpha
Helix 30	AD3	J	79	85	Right-handed 310
Helix 31	AD4	J	88	100	Right-handed alpha
Helix 32	AD5	J	103	107	Right-handed 310
Helix 33	AD6	J	108	115	Right-handed alpha
Helix 34	AD7	J	119	124	Right-handed 310
Helix 35	AD8	E	28	32	Right-handed 310
Helix 36	AD9	E	61	64	Right-handed 310
Helix 37	AE1	E	73	75	Right-handed 310
Helix 38	AE2	E	86	90	Right-handed 310
Helix 39	AE3	E	156	158	Right-handed 310
Helix 40	AE4	E	200	203	Right-handed 310
Helix 41	AE5	F	79	83	Right-handed 310
Helix 42	AE6	F	121	127	Right-handed alpha
Helix 43	AE7	F	183	188	Right-handed alpha
Helix 44	AE8	K	4	15	Right-handed alpha
Helix 45	AE9	K	19	23	Right-handed 310
Helix 46	AF1	K	24	37	Right-handed alpha
Helix 47	AF2	K	79	85	Right-handed 310
Helix 48	AF3	K	88	100	Right-handed alpha
Helix 49	AF4	K	103	107	Right-handed 310
Helix 50	AF5	K	108	115	Right-handed alpha
Helix 51	AF6	K	119	125	Right-handed 310
Helix 52	AF7	G	28	32	Right-handed 310
Helix 53	AF8	G	61	64	Right-handed 310
Helix 54	AF9	G	73	75	Right-handed 310
Helix 55	AG1	G	86	90	Right-handed 310
Helix 56	AG2	G	156	158	Right-handed 310
Helix 57	AG3	G	200	203	Right-handed 310
Helix 58	AG4	H	79	83	Right-handed 310
Helix 59	AG5	H	121	127	Right-handed alpha
Helix 60	AG6	H	183	188	Right-handed alpha
Helix 61	AG7	L	4	15	Right-handed alpha
Helix 62	AG8	L	19	23	Right-handed 310
Helix 63	AG9	L	24	37	Right-handed alpha
Helix 64	AH1	L	79	85	Right-handed 310
Helix 65	AH2	L	88	100	Right-handed alpha
Helix 66	AH3	L	103	107	Right-handed 310
Helix 67	AH4	L	108	115	Right-handed alpha
Helix 68	AH5	L	119	124	Right-handed 310

There are 44 sheets in PDB entry 5VJQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	107	111	parallel
Strand 3	A	91	97	anti-parallel
Strand 4	A	34	40	anti-parallel
Strand 5	A	44	51	anti-parallel
Strand 6	A	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	124	first strand
Strand 2	A	135	145	anti-parallel
Strand 3	A	174	184	anti-parallel
Strand 4	A	163	165	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	124	first strand
Strand 2	A	135	145	anti-parallel
Strand 3	A	174	184	anti-parallel
Strand 4	A	169	171	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	194	199	anti-parallel
Strand 3	A	204	209	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	48	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	173	182	anti-parallel
Strand 4	B	159	163	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	145	150	anti-parallel
Strand 3	B	191	197	anti-parallel
Strand 4	B	205	210	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	43	45	first strand
Strand 2	I	51	53	anti-parallel
Strand 3	I	58	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	91	97	anti-parallel
Strand 4	C	34	40	anti-parallel
Strand 5	C	44	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	124	first strand
Strand 2	C	135	145	anti-parallel
Strand 3	C	174	184	anti-parallel
Strand 4	C	163	165	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	124	first strand
Strand 2	C	135	145	anti-parallel
Strand 3	C	174	184	anti-parallel
Strand 4	C	169	171	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	194	199	anti-parallel
Strand 3	C	204	209	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	97	98	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	173	182	anti-parallel
Strand 4	D	159	163	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	145	150	anti-parallel
Strand 3	D	191	197	anti-parallel
Strand 4	D	205	210	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	45	first strand
Strand 2	J	51	53	anti-parallel
Strand 3	J	58	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	91	97	anti-parallel
Strand 4	E	34	40	anti-parallel
Strand 5	E	44	51	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	124	first strand
Strand 2	E	135	145	anti-parallel
Strand 3	E	174	184	anti-parallel
Strand 4	E	163	165	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	124	first strand
Strand 2	E	135	145	anti-parallel
Strand 3	E	174	184	anti-parallel
Strand 4	E	169	171	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	154	first strand
Strand 2	E	194	199	anti-parallel
Strand 3	E	204	209	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	97	98	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	129	139	anti-parallel
Strand 3	F	173	182	anti-parallel
Strand 4	F	159	163	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	155	first strand
Strand 2	F	145	150	anti-parallel
Strand 3	F	191	197	anti-parallel
Strand 4	F	205	210	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	43	45	first strand
Strand 2	K	51	53	anti-parallel
Strand 3	K	58	59	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	107	111	parallel
Strand 3	G	91	97	anti-parallel
Strand 4	G	34	40	anti-parallel
Strand 5	G	44	51	anti-parallel
Strand 6	G	57	59	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	124	first strand
Strand 2	G	135	145	anti-parallel
Strand 3	G	174	184	anti-parallel
Strand 4	G	163	165	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	124	first strand
Strand 2	G	135	145	anti-parallel
Strand 3	G	174	184	anti-parallel
Strand 4	G	169	171	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	154	first strand
Strand 2	G	194	199	anti-parallel
Strand 3	G	204	209	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	67	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	102	106	parallel
Strand 3	H	84	90	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	45	49	anti-parallel
Strand 6	H	53	54	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	102	106	parallel
Strand 3	H	84	90	anti-parallel
Strand 4	H	97	98	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	118	first strand
Strand 2	H	129	139	anti-parallel
Strand 3	H	173	182	anti-parallel
Strand 4	H	159	163	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	155	first strand
Strand 2	H	145	150	anti-parallel
Strand 3	H	191	198	anti-parallel
Strand 4	H	201	210	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	43	45	first strand
Strand 2	L	51	53	anti-parallel
Strand 3	L	58	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VJQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VJQ