Analysis of interatomic Contacts of Structural Units in PDB entry:
5VJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VJV entry

There is 1 chain in PDB entry 5VJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4SER 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5VJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 32Right-handed alpha
Helix 2
AA2
A
33 39Right-handed alpha
Helix 3
AA3
A
54 69Right-handed alpha
Helix 4
AA4
A
79 89Right-handed alpha
Helix 5
AA5
A
100 110Right-handed 310
Helix 6
AA6
A
111 116Right-handed alpha
Helix 7
AA7
A
122 126Right-handed 310
Helix 8
AA8
A
127 134Right-handed alpha
Helix 9
AA9
A
156 163Right-handed alpha
Helix 10
AB1
A
171 176Right-handed alpha
Helix 11
AB2
A
177 187Right-handed alpha
Helix 12
AB3
A
221 232Right-handed alpha
Helix 13
AB4
A
239 244Right-handed alpha
Helix 14
AB5
A
245 249Right-handed 310
Helix 15
AB6
A
252 256Right-handed 310
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There are 2 sheets in PDB entry 5VJV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
41 44parallel
Strand 3
A
8 11parallel
Strand 4
A
291 295anti-parallel
Strand 5
A
299 302anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 199first strand
Strand 2
A
204 211anti-parallel
Strand 3
A
260 264parallel
Strand 4
A
276 279parallel
Strand 5
A
270 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il