Analysis of interatomic Contacts of Structural Units in PDB entry:
5VJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VJX entry

There are 30 chains in PDB entry 5VJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3THR 63
B
 SER 8LEU 46
C
 LEU 11GLN 47
D
 ASN 2SER 64
E
 GLY 1VAL 49
F
 ASP 4GLN 47
G
 GLY 1THR 63
H
 GLY 1GLY 51
I
 GLY 1GLN 47
J
 GLY 1SER 64
K
 PHE 7VAL 49
L
 ALA 2HIS 50
M
 GLY 1SER 64
N
 PHE 7MSE 48
O
 ALA 2VAL 49
R
 GLY 1SER 64
S
 GLY 1HIS 50
T
 PRO 5MSE 48
U
 GLY 1THR 63
V
 GLY 1VAL 49
W
 GLY 1HIS 50
X
 THR 3SER 64
Y
 ALA 2GLN 47
Z
 MSE 14VAL 49
a
 LEU 4SER 61
b
 ASP 4HIS 50
c
 GLN 10GLN 47
d
 GLY 1GLU 45
e
 PHE 7HIS 50
f
 ASP 4HIS 50
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5VJX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 10Right-handed alpha
Helix 2
AA2
A
11 46Right-handed alpha
Helix 3
AA3
A
55 63Right-handed alpha
Helix 4
AA4
B
9 45Right-handed alpha
Helix 5
AA5
C
12 46Right-handed alpha
Helix 6
AA6
D
3 10Right-handed alpha
Helix 7
AA7
D
12 49Right-handed alpha
Helix 8
AA8
D
54 63Right-handed alpha
Helix 9
AA9
E
6 46Right-handed alpha
Helix 10
AB1
F
5 46Right-handed alpha
Helix 11
AB2
G
2 10Right-handed alpha
Helix 12
AB3
G
12 49Right-handed alpha
Helix 13
AB4
G
51 63Right-handed alpha
Helix 14
AB5
H
6 48Right-handed alpha
Helix 15
AB6
I
6 46Right-handed alpha
Helix 16
AB7
J
2 10Right-handed alpha
Helix 17
AB8
J
12 49Right-handed alpha
Helix 18
AB9
J
54 63Right-handed alpha
Helix 19
AC1
K
8 46Right-handed alpha
Helix 20
AC2
L
4 46Right-handed alpha
Helix 21
AC3
M
2 10Right-handed alpha
Helix 22
AC4
M
11 44Right-handed alpha
Helix 23
AC5
M
53 63Right-handed alpha
Helix 24
AC6
N
10 46Right-handed alpha
Helix 25
AC7
O
4 47Right-handed alpha
Helix 26
AC8
R
2 10Right-handed alpha
Helix 27
AC9
R
11 48Right-handed alpha
Helix 28
AD1
R
52 63Right-handed alpha
Helix 29
AD2
S
4 48Right-handed alpha
Helix 30
AD3
T
6 46Right-handed alpha
Helix 31
AD4
U
2 10Right-handed alpha
Helix 32
AD5
U
12 49Right-handed alpha
Helix 33
AD6
U
51 62Right-handed alpha
Helix 34
AD7
V
6 47Right-handed alpha
Helix 35
AD8
W
6 46Right-handed alpha
Helix 36
AD9
X
4 10Right-handed alpha
Helix 37
AE1
X
11 49Right-handed alpha
Helix 38
AE2
X
51 54Right-handed 310
Helix 39
AE3
X
55 64Right-handed alpha
Helix 40
AE4
Y
4 46Right-handed alpha
Helix 41
AE5
Z
16 47Right-handed alpha
Helix 42
AE6
a
5 10Right-handed alpha
Helix 43
AE7
a
11 40Right-handed alpha
Helix 44
AE8
b
8 48Right-handed alpha
Helix 45
AE9
c
11 44Right-handed alpha
Helix 46
AF1
d
2 10Right-handed alpha
Helix 47
AF2
d
11 44Right-handed alpha
Helix 48
AF3
e
7 11Right-handed 310
Helix 49
AF4
e
12 46Right-handed alpha
Helix 50
AF5
f
8 48Right-handed alpha
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There are no sheets in PDB entry 5VJX
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