Analysis of interatomic Contacts of Structural Units in PDB entry:
5VK0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VK0 entry

There are 36 chains in PDB entry 5VK0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 25	VAL 109
B	THR 1	TRP 7
B	LEU 9	CYS 12
C	GLU 25	VAL 109
D	THR 1	TRP 7
D	LEU 9	CYS 12
E	THR 26	VAL 108
F	THR 1	TRP 7
F	LEU 9	CYS 12
G	GLU 25	VAL 109
H	THR 1	TRP 7
H	LEU 9	CYS 12
I	GLU 25	VAL 109
J	THR 1	TRP 7
J	LEU 9	CYS 12
K	GLU 25	VAL 109
L	THR 1	TRP 7
L	LEU 9	CYS 12
M	GLU 25	VAL 109
N	THR 1	TRP 7
N	LEU 9	CYS 12
O	THR 26	VAL 108
P	THR 1	TRP 7
P	LEU 9	CYS 12
Q	THR 26	VAL 108
R	THR 1	TRP 7
R	LEU 9	CYS 12
S	GLU 25	VAL 109
T	THR 1	TRP 7
T	LEU 9	CYS 12
U	GLU 25	VAL 108
V	THR 1	TRP 7
V	LEU 9	CYS 12
W	GLU 25	VAL 108
X	THR 1	TRP 7
X	LEU 9	CYS 12

There are 60 helices in PDB entry 5VK0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	41	Right-handed alpha
Helix 2	AA2	A	49	65	Right-handed alpha
Helix 3	AA3	A	80	87	Right-handed alpha
Helix 4	AA4	A	95	106	Right-handed alpha
Helix 5	AA5	B	2	11	Right-handed alpha
Helix 6	AA6	C	31	40	Right-handed alpha
Helix 7	AA7	C	49	65	Right-handed alpha
Helix 8	AA8	C	80	87	Right-handed alpha
Helix 9	AA9	C	95	106	Right-handed alpha
Helix 10	AB1	D	2	10	Right-handed alpha
Helix 11	AB2	E	31	41	Right-handed alpha
Helix 12	AB3	E	49	64	Right-handed alpha
Helix 13	AB4	E	80	87	Right-handed alpha
Helix 14	AB5	E	95	106	Right-handed alpha
Helix 15	AB6	F	2	12	Right-handed alpha
Helix 16	AB7	G	31	41	Right-handed alpha
Helix 17	AB8	G	49	64	Right-handed alpha
Helix 18	AB9	G	80	87	Right-handed alpha
Helix 19	AC1	G	95	105	Right-handed alpha
Helix 20	AC2	H	2	12	Right-handed alpha
Helix 21	AC3	I	31	41	Right-handed alpha
Helix 22	AC4	I	49	64	Right-handed alpha
Helix 23	AC5	I	80	87	Right-handed alpha
Helix 24	AC6	I	95	106	Right-handed alpha
Helix 25	AC7	J	2	12	Right-handed alpha
Helix 26	AC8	K	31	41	Right-handed alpha
Helix 27	AC9	K	49	65	Right-handed alpha
Helix 28	AD1	K	80	87	Right-handed alpha
Helix 29	AD2	K	95	106	Right-handed alpha
Helix 30	AD3	L	2	10	Right-handed alpha
Helix 31	AD4	M	31	40	Right-handed alpha
Helix 32	AD5	M	49	64	Right-handed alpha
Helix 33	AD6	M	80	87	Right-handed alpha
Helix 34	AD7	M	95	106	Right-handed alpha
Helix 35	AD8	N	2	11	Right-handed alpha
Helix 36	AD9	O	31	40	Right-handed alpha
Helix 37	AE1	O	49	65	Right-handed alpha
Helix 38	AE2	O	80	87	Right-handed alpha
Helix 39	AE3	O	95	106	Right-handed alpha
Helix 40	AE4	P	2	9	Right-handed alpha
Helix 41	AE5	Q	31	40	Right-handed alpha
Helix 42	AE6	Q	49	64	Right-handed alpha
Helix 43	AE7	Q	80	87	Right-handed alpha
Helix 44	AE8	Q	95	105	Right-handed alpha
Helix 45	AE9	R	2	12	Right-handed alpha
Helix 46	AF1	S	31	41	Right-handed alpha
Helix 47	AF2	S	50	64	Right-handed alpha
Helix 48	AF3	S	80	87	Right-handed alpha
Helix 49	AF4	S	95	106	Right-handed alpha
Helix 50	AF5	T	2	10	Right-handed alpha
Helix 51	AF6	U	31	41	Right-handed alpha
Helix 52	AF7	U	49	64	Right-handed alpha
Helix 53	AF8	U	80	87	Right-handed alpha
Helix 54	AF9	U	97	105	Right-handed alpha
Helix 55	AG1	V	2	11	Right-handed alpha
Helix 56	AG2	W	31	41	Right-handed alpha
Helix 57	AG3	W	50	64	Right-handed alpha
Helix 58	AG4	W	81	87	Right-handed alpha
Helix 59	AG5	W	95	105	Right-handed alpha
Helix 60	AG6	X	2	12	Right-handed alpha

There are 20 sheets in PDB entry 5VK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	107	108	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	90	92	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	107	108	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	76	first strand
Strand 2	C	90	92	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	76	first strand
Strand 2	E	90	92	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	30	first strand
Strand 2	G	107	108	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	76	first strand
Strand 2	G	90	92	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	30	first strand
Strand 2	I	107	108	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	74	76	first strand
Strand 2	I	90	92	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	74	76	first strand
Strand 2	K	90	92	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	30	first strand
Strand 2	M	107	108	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	74	76	first strand
Strand 2	M	90	92	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	74	76	first strand
Strand 2	O	90	92	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	29	30	first strand
Strand 2	Q	107	108	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	74	76	first strand
Strand 2	Q	90	92	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	27	28	first strand
Strand 2	S	48	49	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	74	76	first strand
Strand 2	S	90	92	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	74	76	first strand
Strand 2	U	90	92	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	27	28	first strand
Strand 2	W	48	49	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	74	76	first strand
Strand 2	W	90	92	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VK0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VK0