Analysis of interatomic Contacts of Structural Units in PDB entry:
5VK2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VK2 entry

There are 8 chains in PDB entry 5VK2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 59	SER 255
a	GLY 260	GLN 416
B	THR 59	SER 255
b	GLY 260	GLU 418
C	THR 59	SER 255
c	GLY 260	GLU 418
D	GLU 2	SER 226
E	SER 3	ASP 29

There are 65 helices in PDB entry 5VK2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	79	Right-handed 310
Helix 2	AA2	A	119	126	Right-handed alpha
Helix 3	AA3	A	130	144	Right-handed alpha
Helix 4	AA4	A	149	151	Right-handed 310
Helix 5	AA5	A	157	161	Right-handed 310
Helix 6	AA6	A	182	195	Right-handed alpha
Helix 7	AA7	A	199	204	Right-handed alpha
Helix 8	AA8	A	238	247	Right-handed alpha
Helix 9	AA9	a	294	299	Right-handed alpha
Helix 10	AB1	a	299	304	Right-handed alpha
Helix 11	AB2	a	307	326	Right-handed alpha
Helix 12	AB3	a	333	345	Right-handed alpha
Helix 13	AB4	a	346	359	Right-handed alpha
Helix 14	AB5	a	395	398	Right-handed 310
Helix 15	AB6	a	399	416	Right-handed alpha
Helix 16	AB7	B	74	79	Right-handed 310
Helix 17	AB8	B	119	126	Right-handed alpha
Helix 18	AB9	B	130	144	Right-handed alpha
Helix 19	AC1	B	157	161	Right-handed 310
Helix 20	AC2	B	182	195	Right-handed alpha
Helix 21	AC3	B	199	204	Right-handed alpha
Helix 22	AC4	B	238	247	Right-handed alpha
Helix 23	AC5	b	294	299	Right-handed alpha
Helix 24	AC6	b	299	304	Right-handed alpha
Helix 25	AC7	b	307	326	Right-handed alpha
Helix 26	AC8	b	334	345	Right-handed alpha
Helix 27	AC9	b	346	359	Right-handed alpha
Helix 28	AD1	b	395	398	Right-handed 310
Helix 29	AD2	b	399	416	Right-handed alpha
Helix 30	AD3	C	74	79	Right-handed 310
Helix 31	AD4	C	119	126	Right-handed alpha
Helix 32	AD5	C	130	143	Right-handed alpha
Helix 33	AD6	C	149	151	Right-handed 310
Helix 34	AD7	C	157	161	Right-handed 310
Helix 35	AD8	C	182	195	Right-handed alpha
Helix 36	AD9	C	199	204	Right-handed alpha
Helix 37	AE1	C	238	247	Right-handed alpha
Helix 38	AE2	c	294	299	Right-handed alpha
Helix 39	AE3	c	299	304	Right-handed alpha
Helix 40	AE4	c	307	326	Right-handed alpha
Helix 41	AE5	c	333	341	Right-handed alpha
Helix 42	AE6	c	346	359	Right-handed alpha
Helix 43	AE7	c	395	398	Right-handed 310
Helix 44	AE8	c	399	418	Right-handed alpha
Helix 45	AE9	D	29	33	Right-handed 310
Helix 46	AF1	D	167	169	Right-handed 310
Helix 47	AF2	D	198	203	Right-handed alpha
Helix 48	AF3	D	212	215	Right-handed 310
Helix 49	AF4	E	82	86	Right-handed 310
Helix 50	AF5	E	126	131	Right-handed alpha
Helix 51	AF6	E	186	192	Right-handed alpha
Helix 52	AF7	F	29	33	Right-handed 310
Helix 53	AF8	F	167	169	Right-handed 310
Helix 54	AF9	F	198	203	Right-handed alpha
Helix 55	AG1	F	212	215	Right-handed 310
Helix 56	AG2	G	82	86	Right-handed 310
Helix 57	AG3	G	126	131	Right-handed alpha
Helix 58	AG4	G	186	192	Right-handed alpha
Helix 59	AG5	H	29	33	Right-handed 310
Helix 60	AG6	H	167	169	Right-handed 310
Helix 61	AG7	H	198	203	Right-handed alpha
Helix 62	AG8	H	212	215	Right-handed 310
Helix 63	AG9	L	82	86	Right-handed 310
Helix 64	AH1	L	126	132	Right-handed alpha
Helix 65	AH2	L	186	192	Right-handed alpha

There are 45 sheets in PDB entry 5VK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	66	72	anti-parallel
Strand 3	a	368	374	anti-parallel
Strand 4	a	384	385	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	219	226	anti-parallel
Strand 5	A	163	167	anti-parallel
Strand 6	A	153	155	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	278	280	first strand
Strand 2	a	291	293	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	66	72	anti-parallel
Strand 3	b	368	374	anti-parallel
Strand 4	b	384	385	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	219	226	anti-parallel
Strand 5	B	163	167	anti-parallel
Strand 6	B	153	155	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	278	280	first strand
Strand 2	b	291	293	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	66	72	anti-parallel
Strand 3	c	368	374	anti-parallel
Strand 4	c	384	385	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	87	first strand
Strand 2	C	92	96	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	219	226	anti-parallel
Strand 5	C	163	167	anti-parallel
Strand 6	C	153	155	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	278	280	first strand
Strand 2	c	291	293	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	19	26	anti-parallel
Strand 3	D	80	85	anti-parallel
Strand 4	D	70	75	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	118	123	parallel
Strand 3	D	94	102	anti-parallel
Strand 4	D	34	40	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	60	62	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	118	123	parallel
Strand 3	D	94	102	anti-parallel
Strand 4	D	109	114	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	135	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	D	187	195	anti-parallel
Strand 4	D	174	176	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	135	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	D	187	195	anti-parallel
Strand 4	D	180	181	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	165	first strand
Strand 2	D	205	211	anti-parallel
Strand 3	D	216	222	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	106	110	parallel
Strand 3	E	87	93	anti-parallel
Strand 4	E	37	41	anti-parallel
Strand 5	E	48	52	anti-parallel
Strand 6	E	56	57	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	106	110	parallel
Strand 3	E	87	93	anti-parallel
Strand 4	E	101	102	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	24	first strand
Strand 2	E	73	78	anti-parallel
Strand 3	E	65	70	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	123	first strand
Strand 2	E	135	144	anti-parallel
Strand 3	E	177	185	anti-parallel
Strand 4	E	164	166	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	123	first strand
Strand 2	E	135	144	anti-parallel
Strand 3	E	177	185	anti-parallel
Strand 4	E	170	171	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	160	first strand
Strand 2	E	150	155	anti-parallel
Strand 3	E	196	202	anti-parallel
Strand 4	E	205	211	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	8	first strand
Strand 2	F	19	26	anti-parallel
Strand 3	F	80	85	anti-parallel
Strand 4	F	70	75	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	14	first strand
Strand 2	F	118	123	parallel
Strand 3	F	94	102	anti-parallel
Strand 4	F	34	40	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	60	62	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	14	first strand
Strand 2	F	118	123	parallel
Strand 3	F	94	102	anti-parallel
Strand 4	F	109	114	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	135	first strand
Strand 2	F	146	156	anti-parallel
Strand 3	F	187	196	anti-parallel
Strand 4	F	174	176	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	135	first strand
Strand 2	F	146	156	anti-parallel
Strand 3	F	187	196	anti-parallel
Strand 4	F	180	181	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	205	211	anti-parallel
Strand 3	F	216	222	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	106	110	parallel
Strand 3	G	88	93	anti-parallel
Strand 4	G	37	41	anti-parallel
Strand 5	G	48	52	anti-parallel
Strand 6	G	56	57	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	106	110	parallel
Strand 3	G	88	93	anti-parallel
Strand 4	G	101	102	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	24	first strand
Strand 2	G	73	78	anti-parallel
Strand 3	G	65	70	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	119	123	first strand
Strand 2	G	135	144	anti-parallel
Strand 3	G	177	185	anti-parallel
Strand 4	G	164	166	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	119	123	first strand
Strand 2	G	135	144	anti-parallel
Strand 3	G	177	185	anti-parallel
Strand 4	G	170	171	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	160	first strand
Strand 2	G	150	155	anti-parallel
Strand 3	G	196	202	anti-parallel
Strand 4	G	205	211	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	8	first strand
Strand 2	H	19	26	anti-parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	70	75	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	14	first strand
Strand 2	H	118	123	parallel
Strand 3	H	94	102	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	60	62	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	14	first strand
Strand 2	H	118	123	parallel
Strand 3	H	94	102	anti-parallel
Strand 4	H	109	114	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	146	156	anti-parallel
Strand 3	H	187	196	anti-parallel
Strand 4	H	175	176	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	146	156	anti-parallel
Strand 3	H	187	196	anti-parallel
Strand 4	H	180	181	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	165	first strand
Strand 2	H	205	211	anti-parallel
Strand 3	H	216	222	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	106	110	parallel
Strand 3	L	88	93	anti-parallel
Strand 4	L	37	41	anti-parallel
Strand 5	L	48	52	anti-parallel
Strand 6	L	56	57	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	106	110	parallel
Strand 3	L	88	93	anti-parallel
Strand 4	L	101	102	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	73	78	anti-parallel
Strand 3	L	65	70	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	135	144	anti-parallel
Strand 3	L	177	185	anti-parallel
Strand 4	L	164	166	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	135	144	anti-parallel
Strand 3	L	177	185	anti-parallel
Strand 4	L	170	171	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	160	first strand
Strand 2	L	150	155	anti-parallel
Strand 3	L	196	202	anti-parallel
Strand 4	L	205	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VK2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VK2