Analysis of interatomic Contacts of Structural Units in PDB entry:
5VK4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VK4 entry

There are 2 chains in PDB entry 5VK4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 15ALA 344
B
 ASP 15ALA 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5VK4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 30Right-handed alpha
Helix 2
AA2
A
67 76Right-handed alpha
Helix 3
AA3
A
80 95Right-handed alpha
Helix 4
AA4
A
113 132Right-handed alpha
Helix 5
AA5
A
165 167Right-handed 310
Helix 6
AA6
A
191 203Right-handed alpha
Helix 7
AA7
A
216 221Right-handed alpha
Helix 8
AA8
A
227 238Right-handed alpha
Helix 9
AA9
A
249 255Right-handed alpha
Helix 10
AB1
A
256 259Right-handed 310
Helix 11
AB2
A
270 272Right-handed 310
Helix 12
AB3
A
275 286Right-handed alpha
Helix 13
AB4
A
288 293Right-handed alpha
Helix 14
AB5
A
307 321Right-handed alpha
Helix 15
AB6
B
16 30Right-handed alpha
Helix 16
AB7
B
67 76Right-handed alpha
Helix 17
AB8
B
80 95Right-handed alpha
Helix 18
AB9
B
113 132Right-handed alpha
Helix 19
AC1
B
165 167Right-handed 310
Helix 20
AC2
B
191 203Right-handed alpha
Helix 21
AC3
B
216 221Right-handed alpha
Helix 22
AC4
B
227 238Right-handed alpha
Helix 23
AC5
B
249 255Right-handed alpha
Helix 24
AC6
B
256 259Right-handed 310
Helix 25
AC7
B
270 272Right-handed 310
Helix 26
AC8
B
275 286Right-handed alpha
Helix 27
AC9
B
288 293Right-handed alpha
Helix 28
AD1
B
307 309Right-handed 310
Helix 29
AD2
B
310 321Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5VK4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
B
56 64anti-parallel
Strand 3
B
152 163anti-parallel
Strand 4
B
99 109anti-parallel
Strand 5
B
134 142parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 142first strand
Strand 2
A
99 109parallel
Strand 3
A
152 163anti-parallel
Strand 4
A
56 64anti-parallel
Strand 5
B
45 48anti-parallel
Strand 6
B
36 37anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 245first strand
Strand 2
A
300 306anti-parallel
Strand 3
A
178 183anti-parallel
Strand 4
A
325 333anti-parallel
Strand 5
A
263 268anti-parallel
Strand 6
A
341 344parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
214 215anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 245first strand
Strand 2
B
300 306anti-parallel
Strand 3
B
178 183anti-parallel
Strand 4
B
325 333anti-parallel
Strand 5
B
263 268anti-parallel
Strand 6
B
341 344parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 211first strand
Strand 2
B
214 215anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il