Analysis of interatomic Contacts of Structural Units in PDB entry:
5VKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VKO entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5VKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1250TYR 1450
B
 GLY 1469VAL 1470
B
 PRO 1472PHE 1492
B
 PRO 1494GLY 1499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5VKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1263 1272Right-handed alpha
Helix 2
AA2
A
1331 1339Right-handed alpha
Helix 3
AA3
A
1339 1352Right-handed alpha
Helix 4
AA4
A
1360 1375Right-handed alpha
Helix 5
AA5
A
1426 1446Right-handed alpha
Helix 6
AA6
B
1473 1477Right-handed 310
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There are 2 sheets in PDB entry 5VKO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1279 1283first strand
Strand 2
A
1290 1298anti-parallel
Strand 3
A
1301 1310anti-parallel
Strand 4
A
1321 1324anti-parallel
Strand 5
A
1327 1329anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1380 1385first strand
Strand 2
A
1392 1398anti-parallel
Strand 3
A
1406 1412anti-parallel
Strand 4
A
1417 1419anti-parallel
Strand 5
A
1422 1424anti-parallel
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