Analysis of interatomic Contacts of Structural Units in PDB entry:
5VKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VKQ entry

There are 4 chains in PDB entry 5VKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 124GLY 1689
B
MET 124GLY 1689
C
MET 124GLY 1689
D
MET 124GLY 1689
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are356 helices in PDB entry 5VKQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
132 139Right-handed alpha
Helix 2
AA2
A
144 157Right-handed alpha
Helix 3
AA3
A
167 173Right-handed alpha
Helix 4
AA4
A
178 186Right-handed alpha
Helix 5
AA5
A
200 208Right-handed alpha
Helix 6
AA6
A
211 220Right-handed alpha
Helix 7
AA7
A
235 243Right-handed alpha
Helix 8
AA8
A
251 261Right-handed alpha
Helix 9
AA9
A
270 278Right-handed alpha
Helix 10
AB1
A
281 288Right-handed alpha
Helix 11
AB2
A
305 312Right-handed alpha
Helix 12
AB3
A
313 323Right-handed alpha
Helix 13
AB4
A
336 345Right-handed alpha
Helix 14
AB5
A
347 356Right-handed alpha
Helix 15
AB6
A
371 379Right-handed alpha
Helix 16
AB7
A
380 390Right-handed alpha
Helix 17
AB8
A
403 412Right-handed alpha
Helix 18
AB9
A
413 424Right-handed alpha
Helix 19
AC1
A
437 445Right-handed alpha
Helix 20
AC2
A
446 457Right-handed alpha
Helix 21
AC3
A
471 476Right-handed alpha
Helix 22
AC4
A
481 491Right-handed alpha
Helix 23
AC5
A
504 513Right-handed alpha
Helix 24
AC6
A
514 524Right-handed alpha
Helix 25
AC7
A
537 545Right-handed alpha
Helix 26
AC8
A
547 562Right-handed alpha
Helix 27
AC9
A
562 572Right-handed alpha
Helix 28
AD1
A
575 579Right-handed 310
Helix 29
AD2
A
580 587Right-handed alpha
Helix 30
AD3
A
597 609Right-handed alpha
Helix 31
AD4
A
623 632Right-handed alpha
Helix 32
AD5
A
633 635Right-handed 310
Helix 33
AD6
A
636 642Right-handed alpha
Helix 34
AD7
A
647 654Right-handed alpha
Helix 35
AD8
A
662 671Right-handed alpha
Helix 36
AD9
A
672 682Right-handed alpha
Helix 37
AE1
A
695 704Right-handed alpha
Helix 38
AE2
A
705 715Right-handed alpha
Helix 39
AE3
A
728 737Right-handed alpha
Helix 40
AE4
A
738 750Right-handed alpha
Helix 41
AE5
A
762 771Right-handed alpha
Helix 42
AE6
A
772 783Right-handed alpha
Helix 43
AE7
A
795 803Right-handed alpha
Helix 44
AE8
A
805 815Right-handed alpha
Helix 45
AE9
A
819 823Right-handed 310
Helix 46
AF1
A
829 838Right-handed alpha
Helix 47
AF2
A
839 856Right-handed alpha
Helix 48
AF3
A
865 874Right-handed alpha
Helix 49
AF4
A
875 886Right-handed alpha
Helix 50
AF5
A
898 907Right-handed alpha
Helix 51
AF6
A
908 919Right-handed alpha
Helix 52
AF7
A
931 939Right-handed alpha
Helix 53
AF8
A
941 952Right-handed alpha
Helix 54
AF9
A
977 986Right-handed alpha
Helix 55
AG1
A
987 995Right-handed alpha
Helix 56
AG2
A
1012 1019Right-handed alpha
Helix 57
AG3
A
1022 1033Right-handed alpha
Helix 58
AG4
A
1046 1054Right-handed alpha
Helix 59
AG5
A
1056 1067Right-handed alpha
Helix 60
AG6
A
1079 1088Right-handed alpha
Helix 61
AG7
A
1089 1099Right-handed alpha
Helix 62
AG8
A
1112 1120Right-handed alpha
Helix 63
AG9
A
1122 1132Right-handed alpha
Helix 64
AH1
A
1135 1140Right-handed alpha
Helix 65
AH2
A
1142 1156Right-handed alpha
Helix 66
AH3
A
1158 1168Right-handed alpha
Helix 67
AH4
A
1170 1189Right-handed alpha
Helix 68
AH5
A
1192 1216Right-handed alpha
Helix 69
AH6
A
1219 1225Right-handed alpha
Helix 70
AH7
A
1233 1241Right-handed alpha
Helix 71
AH8
A
1243 1248Right-handed alpha
Helix 72
AH9
A
1249 1262Right-handed alpha
Helix 73
AI1
A
1269 1281Right-handed alpha
Helix 74
AI2
A
1281 1290Right-handed alpha
Helix 75
AI3
A
1299 1323Right-handed alpha
Helix 76
AI4
A
1337 1357Right-handed alpha
Helix 77
AI5
A
1362 1364Right-handed 310
Helix 78
AI6
A
1365 1387Right-handed alpha
Helix 79
AI7
A
1395 1419Right-handed alpha
Helix 80
AI8
A
1428 1460Right-handed alpha
Helix 81
AI9
A
1469 1475Right-handed alpha
Helix 82
AJ1
A
1492 1501Right-handed alpha
Helix 83
AJ2
A
1502 1504Right-handed 310
Helix 84
AJ3
A
1514 1519Right-handed alpha
Helix 85
AJ4
A
1530 1548Right-handed alpha
Helix 86
AJ5
A
1548 1585Right-handed alpha
Helix 87
AJ6
A
1595 1600Right-handed alpha
Helix 88
AJ7
A
1670 1674Right-handed 310
Helix 89
AJ8
A
1676 1689Right-handed alpha
Helix 90
AJ9
B
132 139Right-handed alpha
Helix 91
AK1
B
144 157Right-handed alpha
Helix 92
AK2
B
167 173Right-handed alpha
Helix 93
AK3
B
178 186Right-handed alpha
Helix 94
AK4
B
200 208Right-handed alpha
Helix 95
AK5
B
211 220Right-handed alpha
Helix 96
AK6
B
235 243Right-handed alpha
Helix 97
AK7
B
251 261Right-handed alpha
Helix 98
AK8
B
270 278Right-handed alpha
Helix 99
AK9
B
281 288Right-handed alpha
Helix 100
AL1
B
305 312Right-handed alpha
Helix 101
AL2
B
313 323Right-handed alpha
Helix 102
AL3
B
336 345Right-handed alpha
Helix 103
AL4
B
347 356Right-handed alpha
Helix 104
AL5
B
371 379Right-handed alpha
Helix 105
AL6
B
380 390Right-handed alpha
Helix 106
AL7
B
403 412Right-handed alpha
Helix 107
AL8
B
413 424Right-handed alpha
Helix 108
AL9
B
437 445Right-handed alpha
Helix 109
AM1
B
446 457Right-handed alpha
Helix 110
AM2
B
471 476Right-handed alpha
Helix 111
AM3
B
481 491Right-handed alpha
Helix 112
AM4
B
504 513Right-handed alpha
Helix 113
AM5
B
514 524Right-handed alpha
Helix 114
AM6
B
537 545Right-handed alpha
Helix 115
AM7
B
547 562Right-handed alpha
Helix 116
AM8
B
562 572Right-handed alpha
Helix 117
AM9
B
575 579Right-handed 310
Helix 118
AN1
B
580 587Right-handed alpha
Helix 119
AN2
B
597 609Right-handed alpha
Helix 120
AN3
B
623 632Right-handed alpha
Helix 121
AN4
B
633 635Right-handed 310
Helix 122
AN5
B
636 642Right-handed alpha
Helix 123
AN6
B
647 654Right-handed alpha
Helix 124
AN7
B
662 671Right-handed alpha
Helix 125
AN8
B
672 682Right-handed alpha
Helix 126
AN9
B
695 704Right-handed alpha
Helix 127
AO1
B
705 715Right-handed alpha
Helix 128
AO2
B
728 737Right-handed alpha
Helix 129
AO3
B
738 750Right-handed alpha
Helix 130
AO4
B
762 771Right-handed alpha
Helix 131
AO5
B
772 783Right-handed alpha
Helix 132
AO6
B
795 803Right-handed alpha
Helix 133
AO7
B
805 815Right-handed alpha
Helix 134
AO8
B
819 823Right-handed 310
Helix 135
AO9
B
829 838Right-handed alpha
Helix 136
AP1
B
839 856Right-handed alpha
Helix 137
AP2
B
865 874Right-handed alpha
Helix 138
AP3
B
875 886Right-handed alpha
Helix 139
AP4
B
898 907Right-handed alpha
Helix 140
AP5
B
908 919Right-handed alpha
Helix 141
AP6
B
931 939Right-handed alpha
Helix 142
AP7
B
941 952Right-handed alpha
Helix 143
AP8
B
977 986Right-handed alpha
Helix 144
AP9
B
987 995Right-handed alpha
Helix 145
AQ1
B
1012 1019Right-handed alpha
Helix 146
AQ2
B
1022 1033Right-handed alpha
Helix 147
AQ3
B
1046 1054Right-handed alpha
Helix 148
AQ4
B
1056 1067Right-handed alpha
Helix 149
AQ5
B
1079 1088Right-handed alpha
Helix 150
AQ6
B
1089 1099Right-handed alpha
Helix 151
AQ7
B
1112 1120Right-handed alpha
Helix 152
AQ8
B
1122 1132Right-handed alpha
Helix 153
AQ9
B
1135 1140Right-handed alpha
Helix 154
AR1
B
1142 1156Right-handed alpha
Helix 155
AR2
B
1158 1168Right-handed alpha
Helix 156
AR3
B
1170 1189Right-handed alpha
Helix 157
AR4
B
1192 1216Right-handed alpha
Helix 158
AR5
B
1219 1225Right-handed alpha
Helix 159
AR6
B
1233 1241Right-handed alpha
Helix 160
AR7
B
1243 1248Right-handed alpha
Helix 161
AR8
B
1249 1262Right-handed alpha
Helix 162
AR9
B
1269 1281Right-handed alpha
Helix 163
AS1
B
1281 1290Right-handed alpha
Helix 164
AS2
B
1299 1323Right-handed alpha
Helix 165
AS3
B
1337 1357Right-handed alpha
Helix 166
AS4
B
1362 1364Right-handed 310
Helix 167
AS5
B
1365 1387Right-handed alpha
Helix 168
AS6
B
1395 1419Right-handed alpha
Helix 169
AS7
B
1428 1460Right-handed alpha
Helix 170
AS8
B
1469 1475Right-handed alpha
Helix 171
AS9
B
1492 1501Right-handed alpha
Helix 172
AT1
B
1502 1504Right-handed 310
Helix 173
AT2
B
1514 1519Right-handed alpha
Helix 174
AT3
B
1530 1548Right-handed alpha
Helix 175
AT4
B
1548 1585Right-handed alpha
Helix 176
AT5
B
1595 1600Right-handed alpha
Helix 177
AT6
B
1670 1674Right-handed 310
Helix 178
AT7
B
1676 1689Right-handed alpha
Helix 179
AT8
C
132 139Right-handed alpha
Helix 180
AT9
C
144 157Right-handed alpha
Helix 181
AU1
C
167 173Right-handed alpha
Helix 182
AU2
C
178 186Right-handed alpha
Helix 183
AU3
C
200 208Right-handed alpha
Helix 184
AU4
C
211 220Right-handed alpha
Helix 185
AU5
C
235 243Right-handed alpha
Helix 186
AU6
C
251 261Right-handed alpha
Helix 187
AU7
C
270 278Right-handed alpha
Helix 188
AU8
C
281 288Right-handed alpha
Helix 189
AU9
C
305 312Right-handed alpha
Helix 190
AV1
C
313 323Right-handed alpha
Helix 191
AV2
C
336 345Right-handed alpha
Helix 192
AV3
C
347 356Right-handed alpha
Helix 193
AV4
C
371 379Right-handed alpha
Helix 194
AV5
C
380 390Right-handed alpha
Helix 195
AV6
C
403 412Right-handed alpha
Helix 196
AV7
C
413 424Right-handed alpha
Helix 197
AV8
C
437 445Right-handed alpha
Helix 198
AV9
C
446 457Right-handed alpha
Helix 199
AW1
C
471 476Right-handed alpha
Helix 200
AW2
C
481 491Right-handed alpha
Helix 201
AW3
C
504 513Right-handed alpha
Helix 202
AW4
C
514 524Right-handed alpha
Helix 203
AW5
C
537 545Right-handed alpha
Helix 204
AW6
C
547 562Right-handed alpha
Helix 205
AW7
C
562 572Right-handed alpha
Helix 206
AW8
C
575 579Right-handed 310
Helix 207
AW9
C
580 587Right-handed alpha
Helix 208
AX1
C
597 609Right-handed alpha
Helix 209
AX2
C
623 632Right-handed alpha
Helix 210
AX3
C
633 635Right-handed 310
Helix 211
AX4
C
636 642Right-handed alpha
Helix 212
AX5
C
647 654Right-handed alpha
Helix 213
AX6
C
662 671Right-handed alpha
Helix 214
AX7
C
672 682Right-handed alpha
Helix 215
AX8
C
695 704Right-handed alpha
Helix 216
AX9
C
705 715Right-handed alpha
Helix 217
AY1
C
728 737Right-handed alpha
Helix 218
AY2
C
738 750Right-handed alpha
Helix 219
AY3
C
762 771Right-handed alpha
Helix 220
AY4
C
772 783Right-handed alpha
Helix 221
AY5
C
795 803Right-handed alpha
Helix 222
AY6
C
805 815Right-handed alpha
Helix 223
AY7
C
819 823Right-handed 310
Helix 224
AY8
C
829 838Right-handed alpha
Helix 225
AY9
C
839 856Right-handed alpha
Helix 226
AZ1
C
865 874Right-handed alpha
Helix 227
AZ2
C
875 886Right-handed alpha
Helix 228
AZ3
C
898 907Right-handed alpha
Helix 229
AZ4
C
908 919Right-handed alpha
Helix 230
AZ5
C
931 939Right-handed alpha
Helix 231
AZ6
C
941 952Right-handed alpha
Helix 232
AZ7
C
977 986Right-handed alpha
Helix 233
AZ8
C
987 995Right-handed alpha
Helix 234
AZ9
C
1012 1019Right-handed alpha
Helix 235
BA1
C
1022 1033Right-handed alpha
Helix 236
BA2
C
1046 1054Right-handed alpha
Helix 237
BA3
C
1056 1067Right-handed alpha
Helix 238
BA4
C
1079 1088Right-handed alpha
Helix 239
BA5
C
1089 1099Right-handed alpha
Helix 240
BA6
C
1112 1120Right-handed alpha
Helix 241
BA7
C
1122 1132Right-handed alpha
Helix 242
BA8
C
1135 1140Right-handed alpha
Helix 243
BA9
C
1142 1156Right-handed alpha
Helix 244
BB1
C
1158 1168Right-handed alpha
Helix 245
BB2
C
1170 1189Right-handed alpha
Helix 246
BB3
C
1192 1216Right-handed alpha
Helix 247
BB4
C
1219 1225Right-handed alpha
Helix 248
BB5
C
1233 1241Right-handed alpha
Helix 249
BB6
C
1243 1248Right-handed alpha
Helix 250
BB7
C
1249 1262Right-handed alpha
Helix 251
BB8
C
1269 1281Right-handed alpha
Helix 252
BB9
C
1281 1290Right-handed alpha
Helix 253
BC1
C
1299 1323Right-handed alpha
Helix 254
BC2
C
1337 1357Right-handed alpha
Helix 255
BC3
C
1362 1364Right-handed 310
Helix 256
BC4
C
1365 1387Right-handed alpha
Helix 257
BC5
C
1395 1419Right-handed alpha
Helix 258
BC6
C
1428 1460Right-handed alpha
Helix 259
BC7
C
1469 1475Right-handed alpha
Helix 260
BC8
C
1492 1501Right-handed alpha
Helix 261
BC9
C
1502 1504Right-handed 310
Helix 262
BD1
C
1514 1519Right-handed alpha
Helix 263
BD2
C
1530 1548Right-handed alpha
Helix 264
BD3
C
1548 1585Right-handed alpha
Helix 265
BD4
C
1595 1600Right-handed alpha
Helix 266
BD5
C
1670 1674Right-handed 310
Helix 267
BD6
C
1676 1689Right-handed alpha
Helix 268
BD7
D
132 139Right-handed alpha
Helix 269
BD8
D
144 157Right-handed alpha
Helix 270
BD9
D
167 173Right-handed alpha
Helix 271
BE1
D
178 186Right-handed alpha
Helix 272
BE2
D
200 208Right-handed alpha
Helix 273
BE3
D
211 220Right-handed alpha
Helix 274
BE4
D
235 243Right-handed alpha
Helix 275
BE5
D
251 261Right-handed alpha
Helix 276
BE6
D
270 278Right-handed alpha
Helix 277
BE7
D
281 288Right-handed alpha
Helix 278
BE8
D
305 312Right-handed alpha
Helix 279
BE9
D
313 323Right-handed alpha
Helix 280
BF1
D
336 345Right-handed alpha
Helix 281
BF2
D
347 356Right-handed alpha
Helix 282
BF3
D
371 379Right-handed alpha
Helix 283
BF4
D
380 390Right-handed alpha
Helix 284
BF5
D
403 412Right-handed alpha
Helix 285
BF6
D
413 424Right-handed alpha
Helix 286
BF7
D
437 445Right-handed alpha
Helix 287
BF8
D
446 457Right-handed alpha
Helix 288
BF9
D
471 476Right-handed alpha
Helix 289
BG1
D
481 491Right-handed alpha
Helix 290
BG2
D
504 513Right-handed alpha
Helix 291
BG3
D
514 524Right-handed alpha
Helix 292
BG4
D
537 545Right-handed alpha
Helix 293
BG5
D
547 562Right-handed alpha
Helix 294
BG6
D
562 572Right-handed alpha
Helix 295
BG7
D
575 579Right-handed 310
Helix 296
BG8
D
580 587Right-handed alpha
Helix 297
BG9
D
597 609Right-handed alpha
Helix 298
BH1
D
623 632Right-handed alpha
Helix 299
BH2
D
633 635Right-handed 310
Helix 300
BH3
D
636 642Right-handed alpha
Helix 301
BH4
D
647 654Right-handed alpha
Helix 302
BH5
D
662 671Right-handed alpha
Helix 303
BH6
D
672 682Right-handed alpha
Helix 304
BH7
D
695 704Right-handed alpha
Helix 305
BH8
D
705 715Right-handed alpha
Helix 306
BH9
D
728 737Right-handed alpha
Helix 307
BI1
D
738 750Right-handed alpha
Helix 308
BI2
D
762 771Right-handed alpha
Helix 309
BI3
D
772 783Right-handed alpha
Helix 310
BI4
D
795 803Right-handed alpha
Helix 311
BI5
D
805 815Right-handed alpha
Helix 312
BI6
D
819 823Right-handed 310
Helix 313
BI7
D
829 838Right-handed alpha
Helix 314
BI8
D
839 856Right-handed alpha
Helix 315
BI9
D
865 874Right-handed alpha
Helix 316
BJ1
D
875 886Right-handed alpha
Helix 317
BJ2
D
898 907Right-handed alpha
Helix 318
BJ3
D
908 919Right-handed alpha
Helix 319
BJ4
D
931 939Right-handed alpha
Helix 320
BJ5
D
941 952Right-handed alpha
Helix 321
BJ6
D
977 986Right-handed alpha
Helix 322
BJ7
D
987 995Right-handed alpha
Helix 323
BJ8
D
1012 1019Right-handed alpha
Helix 324
BJ9
D
1022 1033Right-handed alpha
Helix 325
BK1
D
1046 1054Right-handed alpha
Helix 326
BK2
D
1056 1067Right-handed alpha
Helix 327
BK3
D
1079 1088Right-handed alpha
Helix 328
BK4
D
1089 1099Right-handed alpha
Helix 329
BK5
D
1112 1120Right-handed alpha
Helix 330
BK6
D
1122 1132Right-handed alpha
Helix 331
BK7
D
1135 1140Right-handed alpha
Helix 332
BK8
D
1142 1156Right-handed alpha
Helix 333
BK9
D
1158 1168Right-handed alpha
Helix 334
BL1
D
1170 1189Right-handed alpha
Helix 335
BL2
D
1192 1216Right-handed alpha
Helix 336
BL3
D
1219 1225Right-handed alpha
Helix 337
BL4
D
1233 1241Right-handed alpha
Helix 338
BL5
D
1243 1248Right-handed alpha
Helix 339
BL6
D
1249 1262Right-handed alpha
Helix 340
BL7
D
1269 1281Right-handed alpha
Helix 341
BL8
D
1281 1290Right-handed alpha
Helix 342
BL9
D
1299 1323Right-handed alpha
Helix 343
BM1
D
1337 1357Right-handed alpha
Helix 344
BM2
D
1362 1364Right-handed 310
Helix 345
BM3
D
1365 1387Right-handed alpha
Helix 346
BM4
D
1395 1419Right-handed alpha
Helix 347
BM5
D
1428 1460Right-handed alpha
Helix 348
BM6
D
1469 1475Right-handed alpha
Helix 349
BM7
D
1492 1501Right-handed alpha
Helix 350
BM8
D
1502 1504Right-handed 310
Helix 351
BM9
D
1514 1519Right-handed alpha
Helix 352
BN1
D
1530 1548Right-handed alpha
Helix 353
BN2
D
1548 1585Right-handed alpha
Helix 354
BN3
D
1595 1600Right-handed alpha
Helix 355
BN4
D
1670 1674Right-handed 310
Helix 356
BN5
D
1676 1689Right-handed alpha
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