Analysis of interatomic Contacts of Structural Units in PDB entry:
5VKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VKT entry

There are 2 chains in PDB entry 5VKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8THR 360
B
 LYS 8THR 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5VKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 55Right-handed alpha
Helix 2
AA2
A
103 108Right-handed alpha
Helix 3
AA3
A
110 114Right-handed 310
Helix 4
AA4
A
125 129Right-handed 310
Helix 5
AA5
A
146 148Right-handed 310
Helix 6
AA6
A
156 161Right-handed alpha
Helix 7
AA7
A
162 164Right-handed 310
Helix 8
AA8
A
165 177Right-handed alpha
Helix 9
AA9
A
192 205Right-handed alpha
Helix 10
AB1
A
215 217Right-handed 310
Helix 11
AB2
A
218 224Right-handed alpha
Helix 12
AB3
A
236 243Right-handed alpha
Helix 13
AB4
A
260 266Right-handed alpha
Helix 14
AB5
A
287 292Right-handed alpha
Helix 15
AB6
A
304 319Right-handed alpha
Helix 16
AB7
A
328 330Right-handed 310
Helix 17
AB8
A
331 341Right-handed alpha
Helix 18
AB9
B
47 55Right-handed alpha
Helix 19
AC1
B
103 108Right-handed alpha
Helix 20
AC2
B
110 114Right-handed 310
Helix 21
AC3
B
125 129Right-handed 310
Helix 22
AC4
B
146 148Right-handed 310
Helix 23
AC5
B
156 161Right-handed alpha
Helix 24
AC6
B
162 164Right-handed 310
Helix 25
AC7
B
165 177Right-handed alpha
Helix 26
AC8
B
192 205Right-handed alpha
Helix 27
AC9
B
215 217Right-handed 310
Helix 28
AD1
B
218 224Right-handed alpha
Helix 29
AD2
B
236 243Right-handed alpha
Helix 30
AD3
B
260 266Right-handed alpha
Helix 31
AD4
B
286 292Right-handed alpha
Helix 32
AD5
B
304 318Right-handed alpha
Helix 33
AD6
B
328 330Right-handed 310
Helix 34
AD7
B
331 341Right-handed alpha
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There are 10 sheets in PDB entry 5VKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 15first strand
Strand 2
A
22 28anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
36 45anti-parallel
Strand 3
A
71 78anti-parallel
Strand 4
A
90 93anti-parallel
Strand 5
A
149 150anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
36 45anti-parallel
Strand 3
A
347 351anti-parallel
Strand 4
A
324 327parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
118 119anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
A
208 213parallel
Strand 3
A
185 189parallel
Strand 4
A
247 252parallel
Strand 5
A
267 275parallel
Strand 6
A
296 299parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 15first strand
Strand 2
B
22 28anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 144first strand
Strand 2
B
36 45anti-parallel
Strand 3
B
71 78anti-parallel
Strand 4
B
90 93anti-parallel
Strand 5
B
149 150anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 144first strand
Strand 2
B
36 45anti-parallel
Strand 3
B
347 351anti-parallel
Strand 4
B
324 327parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
118 119anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 233first strand
Strand 2
B
208 213parallel
Strand 3
B
185 189parallel
Strand 4
B
247 252parallel
Strand 5
B
267 275parallel
Strand 6
B
296 299parallel
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