Analysis of interatomic Contacts of Structural Units in PDB entry:
5VKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VKW entry

There are 2 chains in PDB entry 5VKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 476
B
 MET 1GLU 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5VKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
9 14Right-handed alpha
Helix 3
AA3
A
17 24Right-handed alpha
Helix 4
AA4
A
25 48Right-handed alpha
Helix 5
AA5
A
53 61Right-handed alpha
Helix 6
AA6
A
67 82Right-handed alpha
Helix 7
AA7
A
83 96Right-handed alpha
Helix 8
AA8
A
109 146Right-handed alpha
Helix 9
AA9
A
165 190Right-handed alpha
Helix 10
AB1
A
202 209Right-handed alpha
Helix 11
AB2
A
212 227Right-handed alpha
Helix 12
AB3
A
242 272Right-handed alpha
Helix 13
AB4
A
295 321Right-handed alpha
Helix 14
AB5
A
327 329Right-handed 310
Helix 15
AB6
A
330 357Right-handed alpha
Helix 16
AB7
A
362 378Right-handed alpha
Helix 17
AB8
A
378 389Right-handed alpha
Helix 18
AB9
A
392 415Right-handed alpha
Helix 19
AC1
A
419 426Right-handed alpha
Helix 20
AC2
A
427 435Right-handed 310
Helix 21
AC3
A
436 441Right-handed alpha
Helix 22
AC4
A
442 446Right-handed 310
Helix 23
AC5
A
449 460Right-handed alpha
Helix 24
AC6
A
460 467Right-handed alpha
Helix 25
AC7
A
468 473Right-handed 310
Helix 26
AC8
B
2 6Right-handed 310
Helix 27
AC9
B
17 24Right-handed alpha
Helix 28
AD1
B
25 48Right-handed alpha
Helix 29
AD2
B
53 62Right-handed alpha
Helix 30
AD3
B
67 82Right-handed alpha
Helix 31
AD4
B
83 96Right-handed alpha
Helix 32
AD5
B
109 146Right-handed alpha
Helix 33
AD6
B
165 190Right-handed alpha
Helix 34
AD7
B
202 209Right-handed alpha
Helix 35
AD8
B
212 227Right-handed alpha
Helix 36
AD9
B
242 272Right-handed alpha
Helix 37
AE1
B
295 321Right-handed alpha
Helix 38
AE2
B
327 329Right-handed 310
Helix 39
AE3
B
330 358Right-handed alpha
Helix 40
AE4
B
362 378Right-handed alpha
Helix 41
AE5
B
378 389Right-handed alpha
Helix 42
AE6
B
392 413Right-handed alpha
Helix 43
AE7
B
419 426Right-handed alpha
Helix 44
AE8
B
427 435Right-handed 310
Helix 45
AE9
B
436 441Right-handed alpha
Helix 46
AF1
B
442 447Right-handed 310
Helix 47
AF2
B
449 460Right-handed alpha
Helix 48
AF3
B
460 467Right-handed alpha
Helix 49
AF4
B
468 473Right-handed 310
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There are 4 sheets in PDB entry 5VKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 155first strand
Strand 2
A
158 164anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
360 361anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 155first strand
Strand 2
B
158 164anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 276first strand
Strand 2
B
360 361anti-parallel
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