Analysis of interatomic Contacts of Structural Units in PDB entry:
5VKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VKZ entry

There are 2 chains in PDB entry 5VKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 264
B
 ARG 15PHE 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5VKZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
63 73Right-handed alpha
Helix 3
AA3
A
185 189Right-handed 310
Helix 4
AA4
A
199 204Right-handed alpha
Helix 5
AA5
A
206 210Right-handed 310
Helix 6
AA6
A
224 228Right-handed 310
Helix 7
AA7
A
230 257Right-handed alpha
Helix 8
AA8
B
16 30Right-handed alpha
Helix 9
AA9
B
63 73Right-handed alpha
Helix 10
AB1
B
185 189Right-handed 310
Helix 11
AB2
B
199 204Right-handed alpha
Helix 12
AB3
B
206 210Right-handed 310
Helix 13
AB4
B
224 228Right-handed 310
Helix 14
AB5
B
230 257Right-handed alpha
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There are 4 sheets in PDB entry 5VKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 46first strand
Strand 2
A
132 141anti-parallel
Strand 3
A
149 171anti-parallel
Strand 4
A
214 222anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 60first strand
Strand 2
A
119 127anti-parallel
Strand 3
A
149 171anti-parallel
Strand 4
A
174 182anti-parallel
Strand 5
A
262 264anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 46first strand
Strand 2
B
132 141anti-parallel
Strand 3
B
149 171anti-parallel
Strand 4
B
214 222anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 60first strand
Strand 2
B
119 127anti-parallel
Strand 3
B
149 171anti-parallel
Strand 4
B
174 182anti-parallel
Strand 5
B
262 264anti-parallel
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