Analysis of interatomic Contacts of Structural Units in PDB entry:
5VL1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VL1 entry

There are 3 chains in PDB entry 5VL1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 9	ARG 494
B	ILE 8	ARG 494
C	ILE 8	SER 327

There are 71 helices in PDB entry 5VL1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	26	Right-handed alpha
Helix 2	AA2	A	39	47	Right-handed alpha
Helix 3	AA3	A	94	98	Right-handed alpha
Helix 4	AA4	A	98	109	Right-handed alpha
Helix 5	AA5	A	149	153	Right-handed 310
Helix 6	AA6	A	154	161	Right-handed alpha
Helix 7	AA7	A	161	169	Right-handed alpha
Helix 8	AA8	A	169	192	Right-handed alpha
Helix 9	AA9	A	232	243	Right-handed alpha
Helix 10	AB1	A	278	298	Right-handed alpha
Helix 11	AB2	A	322	331	Right-handed alpha
Helix 12	AB3	A	339	350	Right-handed alpha
Helix 13	AB4	A	360	373	Right-handed alpha
Helix 14	AB5	A	389	391	Right-handed 310
Helix 15	AB6	A	425	442	Right-handed alpha
Helix 16	AB7	A	451	459	Right-handed alpha
Helix 17	AB8	A	472	481	Right-handed alpha
Helix 18	AB9	A	483	488	Right-handed alpha
Helix 19	AC1	B	9	25	Right-handed alpha
Helix 20	AC2	B	39	47	Right-handed alpha
Helix 21	AC3	B	94	98	Right-handed alpha
Helix 22	AC4	B	98	109	Right-handed alpha
Helix 23	AC5	B	154	161	Right-handed alpha
Helix 24	AC6	B	161	169	Right-handed alpha
Helix 25	AC7	B	169	192	Right-handed alpha
Helix 26	AC8	B	232	243	Right-handed alpha
Helix 27	AC9	B	278	298	Right-handed alpha
Helix 28	AD1	B	322	331	Right-handed alpha
Helix 29	AD2	B	339	350	Right-handed alpha
Helix 30	AD3	B	360	373	Right-handed alpha
Helix 31	AD4	B	374	377	Right-handed 310
Helix 32	AD5	B	389	391	Right-handed 310
Helix 33	AD6	B	425	442	Right-handed alpha
Helix 34	AD7	B	451	460	Right-handed alpha
Helix 35	AD8	B	472	481	Right-handed alpha
Helix 36	AD9	B	483	488	Right-handed alpha
Helix 37	AE1	C	9	26	Right-handed alpha
Helix 38	AE2	C	39	47	Right-handed alpha
Helix 39	AE3	C	94	98	Right-handed alpha
Helix 40	AE4	C	98	109	Right-handed alpha
Helix 41	AE5	C	149	153	Right-handed 310
Helix 42	AE6	C	154	161	Right-handed alpha
Helix 43	AE7	C	161	169	Right-handed alpha
Helix 44	AE8	C	169	192	Right-handed alpha
Helix 45	AE9	C	232	243	Right-handed alpha
Helix 46	AF1	C	278	298	Right-handed alpha
Helix 47	AF2	C	322	331	Right-handed alpha
Helix 48	AF3	C	339	350	Right-handed alpha
Helix 49	AF4	C	360	373	Right-handed alpha
Helix 50	AF5	C	389	391	Right-handed 310
Helix 51	AF6	C	425	442	Right-handed alpha
Helix 52	AF7	C	451	459	Right-handed alpha
Helix 53	AF8	C	472	481	Right-handed alpha
Helix 54	AF9	C	483	488	Right-handed alpha
Helix 55	AG1	D	8	25	Right-handed alpha
Helix 56	AG2	D	39	47	Right-handed alpha
Helix 57	AG3	D	94	98	Right-handed alpha
Helix 58	AG4	D	98	109	Right-handed alpha
Helix 59	AG5	D	154	161	Right-handed alpha
Helix 60	AG6	D	161	169	Right-handed alpha
Helix 61	AG7	D	169	192	Right-handed alpha
Helix 62	AG8	D	232	243	Right-handed alpha
Helix 63	AG9	D	278	298	Right-handed alpha
Helix 64	AH1	D	322	331	Right-handed alpha
Helix 65	AH2	D	339	350	Right-handed alpha
Helix 66	AH3	D	360	373	Right-handed alpha
Helix 67	AH4	D	389	391	Right-handed 310
Helix 68	AH5	D	425	442	Right-handed alpha
Helix 69	AH6	D	451	459	Right-handed alpha
Helix 70	AH7	D	472	481	Right-handed alpha
Helix 71	AH8	D	483	488	Right-handed alpha

There are 16 sheets in PDB entry 5VL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	71	first strand
Strand 2	A	75	81	anti-parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	129	140	parallel
Strand 5	A	114	123	anti-parallel
Strand 6	A	55	71	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	246	254	parallel
Strand 3	A	266	275	anti-parallel
Strand 4	A	465	471	anti-parallel
Strand 5	A	414	421	anti-parallel
Strand 6	A	403	411	anti-parallel
Strand 7	A	381	387	anti-parallel
Strand 8	A	318	321	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	224	228	anti-parallel
Strand 3	A	216	219	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	304	first strand
Strand 2	A	310	312	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	71	first strand
Strand 2	B	75	81	anti-parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	129	140	parallel
Strand 5	B	114	123	anti-parallel
Strand 6	B	55	71	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	197	first strand
Strand 2	B	246	254	parallel
Strand 3	B	266	275	anti-parallel
Strand 4	B	465	471	anti-parallel
Strand 5	B	414	421	anti-parallel
Strand 6	B	403	411	anti-parallel
Strand 7	B	381	387	anti-parallel
Strand 8	B	318	321	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	224	228	anti-parallel
Strand 3	B	216	219	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	304	first strand
Strand 2	B	310	312	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	71	first strand
Strand 2	C	75	81	anti-parallel
Strand 3	C	87	93	anti-parallel
Strand 4	C	129	140	parallel
Strand 5	C	114	123	anti-parallel
Strand 6	C	55	71	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	246	254	parallel
Strand 3	C	266	275	anti-parallel
Strand 4	C	465	471	anti-parallel
Strand 5	C	414	421	anti-parallel
Strand 6	C	403	411	anti-parallel
Strand 7	C	381	387	anti-parallel
Strand 8	C	318	321	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	204	first strand
Strand 2	C	224	228	anti-parallel
Strand 3	C	216	219	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	304	first strand
Strand 2	C	310	312	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	71	first strand
Strand 2	D	75	81	anti-parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	129	140	parallel
Strand 5	D	114	123	anti-parallel
Strand 6	D	55	71	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	197	first strand
Strand 2	D	246	254	parallel
Strand 3	D	266	275	anti-parallel
Strand 4	D	465	471	anti-parallel
Strand 5	D	414	421	anti-parallel
Strand 6	D	403	411	anti-parallel
Strand 7	D	381	387	anti-parallel
Strand 8	D	318	321	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	204	first strand
Strand 2	D	224	228	anti-parallel
Strand 3	D	216	219	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	304	first strand
Strand 2	D	310	312	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VL1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VL1