Analysis of interatomic Contacts of Structural Units in PDB entry:
5VLH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VLH entry

There are 3 chains in PDB entry 5VLH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 61PRO 446
Y
 CYS 1CYS 14
Z
 THR 1VAL 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 5VLH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 71Right-handed 310
Helix 2
AA2
A
87 105Right-handed alpha
Helix 3
AA3
A
127 129Right-handed 310
Helix 4
AA4
A
130 135Right-handed alpha
Helix 5
AA5
A
224 236Right-handed alpha
Helix 6
AA6
A
261 278Right-handed alpha
Helix 7
AA7
A
294 307Right-handed alpha
Helix 8
AA8
A
321 323Right-handed 310
Helix 9
AA9
A
384 403Right-handed alpha
Helix 10
AB1
A
407 419Right-handed alpha
Helix 11
AB2
A
425 429Right-handed 310
Helix 12
AB3
Y
4 10Right-handed alpha
Helix 13
AB4
Z
5 13Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5VLH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
140 151parallel
Strand 3
A
258 260anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 115first strand
Strand 2
A
121 125anti-parallel
Strand 3
A
73 82anti-parallel
Strand 4
A
140 151anti-parallel
Strand 5
A
289 292anti-parallel
Strand 6
A
325 326anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 206first strand
Strand 2
A
246 251parallel
Strand 3
A
181 186parallel
Strand 4
A
283 287parallel
Strand 5
A
310 314parallel
Strand 6
A
334 339parallel
Strand 7
A
361 364parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
351 352anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 371first strand
Strand 2
A
379 382anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 421first strand
Strand 2
A
440 441anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il