Analysis of interatomic Contacts of Structural Units in PDB entry:
5VLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VLI entry

There are 3 chains in PDB entry 5VLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5PRO 325
B
 GLY 501ARG 670
C
 CYS 1CYS 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5VLI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 67Right-handed alpha
Helix 2
AA2
A
68 75Right-handed 310
Helix 3
AA3
A
101 110Right-handed alpha
Helix 4
AA4
A
187 196Right-handed alpha
Helix 5
AA5
B
537 559Right-handed alpha
Helix 6
AA6
B
574 627Right-handed alpha
Helix 7
AA7
B
645 654Right-handed alpha
Helix 8
AA8
B
658 670Right-handed alpha
Helix 9
AA9
C
8 22Right-handed alpha
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There are 12 sheets in PDB entry 5VLI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
531 536first strand
Strand 2
B
522 528anti-parallel
Strand 3
A
7 12anti-parallel
Strand 4
B
637 640anti-parallel
Strand 5
B
630 634anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
29 30anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
316 318anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
295 296parallel
Strand 3
A
308 309parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
275 280parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
83 85parallel
Strand 3
A
268 270parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 119first strand
Strand 2
A
256 262anti-parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
251 254anti-parallel
Strand 5
A
151 153anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 119first strand
Strand 2
A
256 262anti-parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
229 237anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 141first strand
Strand 2
A
144 146anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 169first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
209 213anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 289first strand
Strand 2
A
282 284anti-parallel
Strand 3
A
302 306anti-parallel
Strand 4
B
562 565anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
35 40anti-parallel
Strand 3
C
25 30anti-parallel
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