Analysis of interatomic Contacts of Structural Units in PDB entry:
5VLJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VLJ entry

There are 3 chains in PDB entry 5VLJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1448	MET 4092
B	LEU 140	MET 493
C	LEU 140	MET 493

There are129 helices in PDB entry 5VLJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1448	1455	Right-handed alpha
Helix 2	AA2	A	1460	1465	Right-handed alpha
Helix 3	AA3	A	1469	1487	Right-handed alpha
Helix 4	AA4	A	1488	1492	Right-handed 310
Helix 5	AA5	A	1495	1501	Right-handed alpha
Helix 6	AA6	A	1504	1509	Right-handed alpha
Helix 7	AA7	A	1509	1534	Right-handed alpha
Helix 8	AA8	A	1535	1540	Right-handed 310
Helix 9	AA9	A	1541	1551	Right-handed alpha
Helix 10	AB1	A	1554	1560	Right-handed alpha
Helix 11	AB2	A	1561	1566	Right-handed alpha
Helix 12	AB3	A	1599	1602	Right-handed 310
Helix 13	AB4	A	1603	1633	Right-handed alpha
Helix 14	AB5	A	1635	1642	Right-handed alpha
Helix 15	AB6	A	1644	1665	Right-handed alpha
Helix 16	AB7	A	1668	1687	Right-handed alpha
Helix 17	AB8	A	1691	1717	Right-handed alpha
Helix 18	AB9	A	1721	1724	Right-handed 310
Helix 19	AC1	A	1725	1730	Right-handed alpha
Helix 20	AC2	A	1772	1789	Right-handed alpha
Helix 21	AC3	A	1803	1814	Right-handed alpha
Helix 22	AC4	A	1827	1842	Right-handed alpha
Helix 23	AC5	A	1850	1853	Right-handed 310
Helix 24	AC6	A	1854	1875	Right-handed alpha
Helix 25	AC7	A	1901	1905	Right-handed 310
Helix 26	AC8	A	1909	1914	Right-handed alpha
Helix 27	AC9	A	1925	1938	Right-handed alpha
Helix 28	AD1	A	1943	1958	Right-handed alpha
Helix 29	AD2	A	1969	1986	Right-handed alpha
Helix 30	AD3	A	1991	2001	Right-handed alpha
Helix 31	AD4	A	2010	2020	Right-handed alpha
Helix 32	AD5	A	2031	2045	Right-handed alpha
Helix 33	AD6	A	2050	2067	Right-handed alpha
Helix 34	AD7	A	2081	2096	Right-handed alpha
Helix 35	AD8	A	2105	2109	Right-handed 310
Helix 36	AD9	A	2110	2116	Right-handed alpha
Helix 37	AE1	A	2128	2138	Right-handed alpha
Helix 38	AE2	A	2159	2165	Right-handed 310
Helix 39	AE3	A	2166	2172	Right-handed alpha
Helix 40	AE4	A	2203	2208	Right-handed alpha
Helix 41	AE5	A	2216	2220	Right-handed 310
Helix 42	AE6	A	2221	2235	Right-handed alpha
Helix 43	AE7	A	2243	2259	Right-handed alpha
Helix 44	AE8	A	2259	2271	Right-handed alpha
Helix 45	AE9	A	2279	2302	Right-handed alpha
Helix 46	AF1	A	2306	2326	Right-handed alpha
Helix 47	AF2	A	2331	2340	Right-handed alpha
Helix 48	AF3	A	2341	2345	Right-handed 310
Helix 49	AF4	A	2387	2391	Right-handed 310
Helix 50	AF5	A	2394	2411	Right-handed alpha
Helix 51	AF6	A	2423	2432	Right-handed alpha
Helix 52	AF7	A	2450	2459	Right-handed alpha
Helix 53	AF8	A	2500	2511	Right-handed alpha
Helix 54	AF9	A	2563	2582	Right-handed alpha
Helix 55	AG1	A	2583	2587	Right-handed 310
Helix 56	AG2	A	2588	2607	Right-handed alpha
Helix 57	AG3	A	2612	2616	Right-handed 310
Helix 58	AG4	A	2619	2634	Right-handed alpha
Helix 59	AG5	A	2640	2656	Right-handed alpha
Helix 60	AG6	A	2662	2681	Right-handed alpha
Helix 61	AG7	A	2685	2689	Right-handed 310
Helix 62	AG8	A	2708	2720	Right-handed alpha
Helix 63	AG9	A	2721	2724	Right-handed 310
Helix 64	AH1	A	2735	2751	Right-handed alpha
Helix 65	AH2	A	2766	2778	Right-handed alpha
Helix 66	AH3	A	2791	2808	Right-handed alpha
Helix 67	AH4	A	2820	2822	Right-handed 310
Helix 68	AH5	A	2824	2838	Right-handed alpha
Helix 69	AH6	A	2845	2863	Right-handed alpha
Helix 70	AH7	A	2865	2868	Right-handed 310
Helix 71	AH8	A	2869	2884	Right-handed alpha
Helix 72	AH9	A	2897	2901	Right-handed 310
Helix 73	AI1	A	2905	2910	Right-handed alpha
Helix 74	AI2	A	2921	2935	Right-handed alpha
Helix 75	AI3	A	2960	2975	Right-handed alpha
Helix 76	AI4	A	2989	3022	Right-handed alpha
Helix 77	AI5	A	3023	3028	Right-handed 310
Helix 78	AI6	A	3300	3316	Right-handed alpha
Helix 79	AI7	A	3318	3333	Right-handed alpha
Helix 80	AI8	A	3338	3353	Right-handed alpha
Helix 81	AI9	A	3365	3370	Right-handed alpha
Helix 82	AJ1	A	3372	3381	Right-handed alpha
Helix 83	AJ2	A	3388	3393	Right-handed alpha
Helix 84	AJ3	A	3393	3398	Right-handed alpha
Helix 85	AJ4	A	3412	3423	Right-handed alpha
Helix 86	AJ5	A	3437	3445	Right-handed alpha
Helix 87	AJ6	A	3457	3462	Right-handed alpha
Helix 88	AJ7	A	3463	3470	Right-handed alpha
Helix 89	AJ8	A	3506	3512	Right-handed alpha
Helix 90	AJ9	A	3521	3534	Right-handed alpha
Helix 91	AK1	A	3535	3538	Right-handed 310
Helix 92	AK2	A	3539	3552	Right-handed alpha
Helix 93	AK3	A	3553	3555	Right-handed 310
Helix 94	AK4	A	3556	3565	Right-handed alpha
Helix 95	AK5	A	3569	3573	Right-handed 310
Helix 96	AK6	A	3576	3580	Right-handed 310
Helix 97	AK7	A	3583	3613	Right-handed alpha
Helix 98	AK8	A	3614	3617	Right-handed 310
Helix 99	AK9	A	3618	3636	Right-handed alpha
Helix 100	AL1	A	3645	3658	Right-handed alpha
Helix 101	AL2	A	3670	3687	Right-handed alpha
Helix 102	AL3	A	3691	3707	Right-handed alpha
Helix 103	AL4	A	3716	3723	Right-handed alpha
Helix 104	AL5	A	3744	3754	Right-handed alpha
Helix 105	AL6	A	3758	3763	Right-handed alpha
Helix 106	AL7	A	3773	3779	Right-handed alpha
Helix 107	AL8	A	3795	3808	Right-handed alpha
Helix 108	AL9	A	3818	3836	Right-handed alpha
Helix 109	AM1	A	3847	3849	Right-handed 310
Helix 110	AM2	A	3850	3869	Right-handed alpha
Helix 111	AM3	A	3885	3890	Right-handed alpha
Helix 112	AM4	A	3902	3913	Right-handed alpha
Helix 113	AM5	A	3923	3946	Right-handed alpha
Helix 114	AM6	A	3957	3971	Right-handed alpha
Helix 115	AM7	A	3971	3976	Right-handed alpha
Helix 116	AM8	A	3981	3992	Right-handed alpha
Helix 117	AM9	A	4000	4015	Right-handed alpha
Helix 118	AN1	A	4041	4046	Right-handed alpha
Helix 119	AN2	A	4059	4064	Right-handed alpha
Helix 120	AN3	A	4067	4090	Right-handed alpha
Helix 121	AN4	B	211	219	Right-handed alpha
Helix 122	AN5	B	263	266	Right-handed 310
Helix 123	AN6	B	350	356	Right-handed alpha
Helix 124	AN7	B	362	366	Right-handed 310
Helix 125	AN8	B	473	478	Right-handed alpha
Helix 126	AN9	C	211	219	Right-handed alpha
Helix 127	AO1	C	263	266	Right-handed 310
Helix 128	AO2	C	351	356	Right-handed alpha
Helix 129	AO3	C	474	478	Right-handed 310

There are 27 sheets in PDB entry 5VLJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1569	1575	first strand
Strand 2	A	1578	1584	anti-parallel
Strand 3	A	1589	1597	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1733	1736	first strand
Strand 2	A	1747	1751	anti-parallel
Strand 3	A	1754	1757	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1818	1821	first strand
Strand 2	A	1844	1848	parallel
Strand 3	A	1893	1898	parallel
Strand 4	A	1791	1795	parallel
Strand 5	A	1916	1919	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1878	1881	first strand
Strand 2	A	1884	1887	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2099	2103	first strand
Strand 2	A	2149	2154	parallel
Strand 3	A	2190	2196	parallel
Strand 4	A	2069	2073	parallel
Strand 5	A	2211	2214	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2117	2118	first strand
Strand 2	A	2125	2126	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2175	2177	first strand
Strand 2	A	2183	2185	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2360	2362	first strand
Strand 2	A	2368	2370	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2439	2443	first strand
Strand 2	A	2482	2486	parallel
Strand 3	A	2529	2535	parallel
Strand 4	A	2414	2417	parallel
Strand 5	A	2555	2558	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2514	2516	first strand
Strand 2	A	2523	2525	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2780	2782	first strand
Strand 2	A	2813	2818	parallel
Strand 3	A	2888	2891	parallel
Strand 4	A	2756	2760	parallel
Strand 5	A	2913	2918	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3405	3406	first strand
Strand 2	A	3514	3515	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3811	3813	first strand
Strand 2	A	3838	3841	parallel
Strand 3	A	3872	3876	parallel
Strand 4	A	3786	3789	parallel
Strand 5	A	3893	3896	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	488	492	anti-parallel
Strand 3	B	480	484	anti-parallel
Strand 4	B	461	466	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	163	first strand
Strand 2	B	169	174	anti-parallel
Strand 3	B	178	183	anti-parallel
Strand 4	B	192	195	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	205	first strand
Strand 2	B	221	226	anti-parallel
Strand 3	B	231	237	anti-parallel
Strand 4	B	241	249	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	261	first strand
Strand 2	B	269	274	anti-parallel
Strand 3	B	279	283	anti-parallel
Strand 4	B	289	293	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	306	first strand
Strand 2	B	309	314	anti-parallel
Strand 3	B	319	323	anti-parallel
Strand 4	B	329	333	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	343	first strand
Strand 2	B	372	377	anti-parallel
Strand 3	B	381	386	anti-parallel
Strand 4	B	411	414	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	422	first strand
Strand 2	B	429	434	anti-parallel
Strand 3	B	439	443	anti-parallel
Strand 4	B	448	452	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	153	first strand
Strand 2	C	488	493	anti-parallel
Strand 3	C	480	484	anti-parallel
Strand 4	C	461	466	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	163	first strand
Strand 2	C	169	174	anti-parallel
Strand 3	C	178	183	anti-parallel
Strand 4	C	192	195	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	205	first strand
Strand 2	C	221	226	anti-parallel
Strand 3	C	231	237	anti-parallel
Strand 4	C	241	249	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	262	first strand
Strand 2	C	269	274	anti-parallel
Strand 3	C	279	283	anti-parallel
Strand 4	C	291	293	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	306	first strand
Strand 2	C	309	314	anti-parallel
Strand 3	C	319	323	anti-parallel
Strand 4	C	329	333	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	345	first strand
Strand 2	C	372	377	anti-parallel
Strand 3	C	382	386	anti-parallel
Strand 4	C	409	413	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	422	first strand
Strand 2	C	429	434	anti-parallel
Strand 3	C	439	443	anti-parallel
Strand 4	C	448	453	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VLJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VLJ