Analysis of interatomic Contacts of Structural Units in PDB entry:
5VLQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VLQ entry

There are 2 chains in PDB entry 5VLQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4GLN 569
B
 GLY 4LEU 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5VLQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 25Right-handed alpha
Helix 2
AA2
A
35 45Right-handed alpha
Helix 3
AA3
A
100 107Right-handed alpha
Helix 4
AA4
A
119 123Right-handed 310
Helix 5
AA5
A
124 128Right-handed 310
Helix 6
AA6
A
141 144Right-handed 310
Helix 7
AA7
A
145 155Right-handed alpha
Helix 8
AA8
A
156 159Right-handed 310
Helix 9
AA9
A
163 167Right-handed 310
Helix 10
AB1
A
182 201Right-handed alpha
Helix 11
AB2
A
244 258Right-handed alpha
Helix 12
AB3
A
285 293Right-handed alpha
Helix 13
AB4
A
300 303Right-handed 310
Helix 14
AB5
A
304 319Right-handed alpha
Helix 15
AB6
A
349 356Right-handed alpha
Helix 16
AB7
A
455 465Right-handed alpha
Helix 17
AB8
A
469 474Right-handed alpha
Helix 18
AB9
A
474 489Right-handed alpha
Helix 19
AC1
A
531 550Right-handed alpha
Helix 20
AC2
A
550 555Right-handed alpha
Helix 21
AC3
B
8 26Right-handed alpha
Helix 22
AC4
B
35 45Right-handed alpha
Helix 23
AC5
B
100 107Right-handed alpha
Helix 24
AC6
B
119 123Right-handed 310
Helix 25
AC7
B
124 128Right-handed 310
Helix 26
AC8
B
141 144Right-handed 310
Helix 27
AC9
B
145 154Right-handed alpha
Helix 28
AD1
B
155 159Right-handed 310
Helix 29
AD2
B
163 167Right-handed 310
Helix 30
AD3
B
180 201Right-handed alpha
Helix 31
AD4
B
244 261Right-handed alpha
Helix 32
AD5
B
279 293Right-handed alpha
Helix 33
AD6
B
300 303Right-handed 310
Helix 34
AD7
B
304 319Right-handed alpha
Helix 35
AD8
B
349 356Right-handed alpha
Helix 36
AD9
B
455 465Right-handed alpha
Helix 37
AE1
B
469 474Right-handed alpha
Helix 38
AE2
B
474 489Right-handed alpha
Helix 39
AE3
B
531 550Right-handed alpha
Helix 40
AE4
B
550 555Right-handed alpha
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There are 8 sheets in PDB entry 5VLQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
28 32parallel
Strand 3
A
114 117parallel
Strand 4
A
133 134parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
371 372anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
409 412anti-parallel
Strand 3
A
386 396anti-parallel
Strand 4
A
502 510anti-parallel
Strand 5
A
516 523anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
409 412anti-parallel
Strand 3
A
386 396anti-parallel
Strand 4
A
401 405anti-parallel
Strand 5
A
563 568anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
28 32parallel
Strand 3
B
114 117parallel
Strand 4
B
133 134parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 172first strand
Strand 2
B
371 373anti-parallel
Strand 3
B
331 333anti-parallel
Strand 4
B
346 347anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
409 412anti-parallel
Strand 3
B
386 396anti-parallel
Strand 4
B
502 510anti-parallel
Strand 5
B
516 523anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
409 412anti-parallel
Strand 3
B
386 396anti-parallel
Strand 4
B
401 405anti-parallel
Strand 5
B
563 568anti-parallel
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