Analysis of interatomic Contacts of Structural Units in PDB entry:
5VM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VM1 entry

There are 3 chains in PDB entry 5VM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	ASP 483
B	HIS 0	ASP 483
C	HIS 0	ASP 422

There are 90 helices in PDB entry 5VM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	63	Right-handed alpha
Helix 2	AA2	A	63	69	Right-handed alpha
Helix 3	AA3	A	103	113	Right-handed alpha
Helix 4	AA4	A	114	121	Right-handed alpha
Helix 5	AA5	A	128	140	Right-handed alpha
Helix 6	AA6	A	140	146	Right-handed alpha
Helix 7	AA7	A	152	163	Right-handed alpha
Helix 8	AA8	A	169	173	Right-handed alpha
Helix 9	AA9	A	186	193	Right-handed alpha
Helix 10	AB1	A	196	200	Right-handed 310
Helix 11	AB2	A	214	221	Right-handed alpha
Helix 12	AB3	A	235	244	Right-handed alpha
Helix 13	AB4	A	271	275	Right-handed 310
Helix 14	AB5	A	296	308	Right-handed alpha
Helix 15	AB6	A	310	319	Right-handed alpha
Helix 16	AB7	A	358	383	Right-handed alpha
Helix 17	AB8	A	395	399	Right-handed 310
Helix 18	AB9	A	400	412	Right-handed alpha
Helix 19	AC1	A	424	439	Right-handed alpha
Helix 20	AC2	A	441	446	Right-handed alpha
Helix 21	AC3	A	458	460	Right-handed 310
Helix 22	AC4	A	461	481	Right-handed alpha
Helix 23	AC5	B	44	63	Right-handed alpha
Helix 24	AC6	B	63	68	Right-handed alpha
Helix 25	AC7	B	103	112	Right-handed alpha
Helix 26	AC8	B	114	121	Right-handed alpha
Helix 27	AC9	B	128	140	Right-handed alpha
Helix 28	AD1	B	140	146	Right-handed alpha
Helix 29	AD2	B	152	163	Right-handed alpha
Helix 30	AD3	B	169	173	Right-handed alpha
Helix 31	AD4	B	174	176	Right-handed 310
Helix 32	AD5	B	186	192	Right-handed alpha
Helix 33	AD6	B	196	200	Right-handed 310
Helix 34	AD7	B	235	244	Right-handed alpha
Helix 35	AD8	B	271	275	Right-handed 310
Helix 36	AD9	B	296	308	Right-handed alpha
Helix 37	AE1	B	310	319	Right-handed alpha
Helix 38	AE2	B	358	383	Right-handed alpha
Helix 39	AE3	B	395	399	Right-handed 310
Helix 40	AE4	B	400	412	Right-handed alpha
Helix 41	AE5	B	424	439	Right-handed alpha
Helix 42	AE6	B	441	446	Right-handed alpha
Helix 43	AE7	B	458	460	Right-handed 310
Helix 44	AE8	B	461	481	Right-handed alpha
Helix 45	AE9	C	44	63	Right-handed alpha
Helix 46	AF1	C	63	68	Right-handed alpha
Helix 47	AF2	C	103	112	Right-handed alpha
Helix 48	AF3	C	113	121	Right-handed alpha
Helix 49	AF4	C	128	140	Right-handed alpha
Helix 50	AF5	C	140	146	Right-handed alpha
Helix 51	AF6	C	152	163	Right-handed alpha
Helix 52	AF7	C	169	173	Right-handed alpha
Helix 53	AF8	C	174	176	Right-handed 310
Helix 54	AF9	C	186	192	Right-handed alpha
Helix 55	AG1	C	196	200	Right-handed 310
Helix 56	AG2	C	214	221	Right-handed alpha
Helix 57	AG3	C	235	244	Right-handed alpha
Helix 58	AG4	C	271	275	Right-handed 310
Helix 59	AG5	C	296	308	Right-handed alpha
Helix 60	AG6	C	310	319	Right-handed alpha
Helix 61	AG7	C	358	384	Right-handed alpha
Helix 62	AG8	C	395	399	Right-handed 310
Helix 63	AG9	C	400	412	Right-handed alpha
Helix 64	AH1	C	424	439	Right-handed alpha
Helix 65	AH2	C	441	446	Right-handed alpha
Helix 66	AH3	C	458	460	Right-handed 310
Helix 67	AH4	C	461	481	Right-handed alpha
Helix 68	AH5	D	44	63	Right-handed alpha
Helix 69	AH6	D	63	68	Right-handed alpha
Helix 70	AH7	D	103	112	Right-handed alpha
Helix 71	AH8	D	113	121	Right-handed alpha
Helix 72	AH9	D	128	140	Right-handed alpha
Helix 73	AI1	D	140	146	Right-handed alpha
Helix 74	AI2	D	152	163	Right-handed alpha
Helix 75	AI3	D	169	173	Right-handed alpha
Helix 76	AI4	D	174	176	Right-handed 310
Helix 77	AI5	D	186	193	Right-handed alpha
Helix 78	AI6	D	196	200	Right-handed 310
Helix 79	AI7	D	214	221	Right-handed alpha
Helix 80	AI8	D	235	244	Right-handed alpha
Helix 81	AI9	D	271	275	Right-handed 310
Helix 82	AJ1	D	296	308	Right-handed alpha
Helix 83	AJ2	D	310	319	Right-handed alpha
Helix 84	AJ3	D	358	383	Right-handed alpha
Helix 85	AJ4	D	395	399	Right-handed 310
Helix 86	AJ5	D	400	412	Right-handed alpha
Helix 87	AJ6	D	424	439	Right-handed alpha
Helix 88	AJ7	D	441	446	Right-handed alpha
Helix 89	AJ8	D	458	460	Right-handed 310
Helix 90	AJ9	D	461	481	Right-handed alpha

There are 32 sheets in PDB entry 5VM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	30	first strand
Strand 2	A	11	18	anti-parallel
Strand 3	A	1	7	anti-parallel
Strand 4	A	70	77	parallel
Strand 5	A	228	230	parallel
Strand 6	A	209	212	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	30	first strand
Strand 2	A	11	18	anti-parallel
Strand 3	A	1	7	anti-parallel
Strand 4	A	70	77	parallel
Strand 5	A	233	234	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	95	96	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	149	151	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	202	204	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	A	184	185	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	280	first strand
Strand 2	A	287	293	anti-parallel
Strand 3	A	259	265	anti-parallel
Strand 4	A	251	255	anti-parallel
Strand 5	A	391	394	parallel
Strand 6	A	415	418	parallel
Strand 7	A	451	455	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	331	first strand
Strand 2	A	349	351	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	30	first strand
Strand 2	B	11	18	anti-parallel
Strand 3	B	1	7	anti-parallel
Strand 4	B	70	77	parallel
Strand 5	B	228	230	parallel
Strand 6	B	209	212	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	30	first strand
Strand 2	B	11	18	anti-parallel
Strand 3	B	1	7	anti-parallel
Strand 4	B	70	77	parallel
Strand 5	B	233	234	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	95	96	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	149	151	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	202	204	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	184	185	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	280	first strand
Strand 2	B	287	293	anti-parallel
Strand 3	B	259	265	anti-parallel
Strand 4	B	250	255	anti-parallel
Strand 5	B	390	394	parallel
Strand 6	B	415	418	parallel
Strand 7	B	451	455	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	331	first strand
Strand 2	B	349	351	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	30	first strand
Strand 2	C	11	18	anti-parallel
Strand 3	C	1	7	anti-parallel
Strand 4	C	70	77	parallel
Strand 5	C	228	230	parallel
Strand 6	C	209	212	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	30	first strand
Strand 2	C	11	18	anti-parallel
Strand 3	C	1	7	anti-parallel
Strand 4	C	70	77	parallel
Strand 5	C	233	234	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	95	96	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	149	151	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	202	204	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	179	first strand
Strand 2	C	184	185	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	280	first strand
Strand 2	C	287	293	anti-parallel
Strand 3	C	259	265	anti-parallel
Strand 4	C	251	255	anti-parallel
Strand 5	C	391	394	parallel
Strand 6	C	415	418	parallel
Strand 7	C	451	455	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	331	first strand
Strand 2	C	349	351	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	30	first strand
Strand 2	D	11	18	anti-parallel
Strand 3	D	1	7	anti-parallel
Strand 4	D	70	77	parallel
Strand 5	D	228	230	parallel
Strand 6	D	209	212	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	30	first strand
Strand 2	D	11	18	anti-parallel
Strand 3	D	1	7	anti-parallel
Strand 4	D	70	77	parallel
Strand 5	D	233	234	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	95	96	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	149	151	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	168	first strand
Strand 2	D	202	204	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	179	first strand
Strand 2	D	184	185	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	280	first strand
Strand 2	D	287	293	anti-parallel
Strand 3	D	259	265	anti-parallel
Strand 4	D	250	255	anti-parallel
Strand 5	D	390	394	parallel
Strand 6	D	415	418	parallel
Strand 7	D	451	455	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	331	first strand
Strand 2	D	349	351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VM1