Analysis of interatomic Contacts of Structural Units in PDB entry:
5VM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VM2 entry

There are 4 chains in PDB entry 5VM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 38
A
 GLY 40ASP 347
B
 MET 1ILE 38
B
 GLY 40ASP 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 5VM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 49Right-handed alpha
Helix 2
AA2
A
98 103Right-handed alpha
Helix 3
AA3
A
105 109Right-handed 310
Helix 4
AA4
A
144 164Right-handed alpha
Helix 5
AA5
A
178 191Right-handed alpha
Helix 6
AA6
A
202 212Right-handed alpha
Helix 7
AA7
A
224 233Right-handed alpha
Helix 8
AA8
A
247 254Right-handed alpha
Helix 9
AA9
A
277 282Right-handed 310
Helix 10
AB1
A
296 306Right-handed alpha
Helix 11
AB2
A
311 313Right-handed 310
Helix 12
AB3
A
323 334Right-handed alpha
Helix 13
AB4
A
335 338Right-handed 310
Helix 14
AB5
B
39 49Right-handed alpha
Helix 15
AB6
B
98 103Right-handed alpha
Helix 16
AB7
B
105 109Right-handed 310
Helix 17
AB8
B
144 164Right-handed alpha
Helix 18
AB9
B
178 191Right-handed alpha
Helix 19
AC1
B
202 212Right-handed alpha
Helix 20
AC2
B
224 233Right-handed alpha
Helix 21
AC3
B
247 254Right-handed alpha
Helix 22
AC4
B
278 282Right-handed 310
Helix 23
AC5
B
296 306Right-handed alpha
Helix 24
AC6
B
323 334Right-handed alpha
Helix 25
AC7
B
335 338Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 5VM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
13 19anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
28 38anti-parallel
Strand 3
A
67 74anti-parallel
Strand 4
A
86 89anti-parallel
Strand 5
A
136 138anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
28 38anti-parallel
Strand 3
A
340 344anti-parallel
Strand 4
A
315 320parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
195 200parallel
Strand 3
A
171 175parallel
Strand 4
A
238 243parallel
Strand 5
A
258 267parallel
Strand 6
A
286 290parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 10first strand
Strand 2
B
13 19anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 132first strand
Strand 2
B
28 38anti-parallel
Strand 3
B
66 74anti-parallel
Strand 4
B
86 89anti-parallel
Strand 5
B
136 138anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 132first strand
Strand 2
B
28 38anti-parallel
Strand 3
B
340 344anti-parallel
Strand 4
B
315 320parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 219first strand
Strand 2
B
196 200parallel
Strand 3
B
172 175parallel
Strand 4
B
238 243parallel
Strand 5
B
258 267parallel
Strand 6
B
286 290parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il