Analysis of interatomic Contacts of Structural Units in PDB entry:
5VM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VM4 entry

There are 12 chains in PDB entry 5VM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5HIS 134
B
 LYS 5HIS 136
C
 LYS 5HIS 134
D
 LYS 5HIS 136
E
 LYS 5HIS 136
F
 LYS 5HIS 136
G
 LYS 5HIS 136
H
 LYS 5HIS 134
I
 LYS 5HIS 134
J
 LYS 5HIS 134
K
 LYS 5HIS 134
L
 LYS 5HIS 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5VM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 93Right-handed 310
Helix 2
AA2
A
108 112Right-handed 310
Helix 3
AA3
A
114 118Right-handed 310
Helix 4
AA4
B
64 67Right-handed 310
Helix 5
AA5
B
89 93Right-handed 310
Helix 6
AA6
B
108 112Right-handed 310
Helix 7
AA7
B
114 118Right-handed 310
Helix 8
AA8
C
64 67Right-handed 310
Helix 9
AA9
C
89 93Right-handed 310
Helix 10
AB1
C
108 112Right-handed 310
Helix 11
AB2
C
114 118Right-handed 310
Helix 12
AB3
D
89 93Right-handed 310
Helix 13
AB4
D
108 112Right-handed 310
Helix 14
AB5
D
114 118Right-handed 310
Helix 15
AB6
E
89 93Right-handed 310
Helix 16
AB7
E
108 112Right-handed 310
Helix 17
AB8
E
114 118Right-handed 310
Helix 18
AB9
F
89 93Right-handed 310
Helix 19
AC1
F
108 112Right-handed 310
Helix 20
AC2
F
114 118Right-handed 310
Helix 21
AC3
G
89 93Right-handed 310
Helix 22
AC4
G
108 112Right-handed 310
Helix 23
AC5
G
114 118Right-handed 310
Helix 24
AC6
H
89 93Right-handed 310
Helix 25
AC7
H
108 112Right-handed 310
Helix 26
AC8
H
114 118Right-handed 310
Helix 27
AC9
I
64 67Right-handed 310
Helix 28
AD1
I
89 93Right-handed 310
Helix 29
AD2
I
108 112Right-handed 310
Helix 30
AD3
I
114 118Right-handed 310
Helix 31
AD4
J
89 93Right-handed 310
Helix 32
AD5
J
108 112Right-handed 310
Helix 33
AD6
J
114 118Right-handed 310
Helix 34
AD7
K
64 67Right-handed 310
Helix 35
AD8
K
89 93Right-handed 310
Helix 36
AD9
K
108 112Right-handed 310
Helix 37
AE1
K
114 118Right-handed 310
Helix 38
AE2
L
64 67Right-handed 310
Helix 39
AE3
L
89 93Right-handed 310
Helix 40
AE4
L
108 112Right-handed 310
Helix 41
AE5
L
114 118Right-handed 310
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There are 36 sheets in PDB entry 5VM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
20 26anti-parallel
Strand 3
A
80 85anti-parallel
Strand 4
A
70 75anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
125 133parallel
Strand 3
A
94 102anti-parallel
Strand 4
A
34 41anti-parallel
Strand 5
A
48 54anti-parallel
Strand 6
A
60 62anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
125 133parallel
Strand 3
A
94 102anti-parallel
Strand 4
A
120 121anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
20 26anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
70 75anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
125 133parallel
Strand 3
B
94 102anti-parallel
Strand 4
B
34 41anti-parallel
Strand 5
B
48 54anti-parallel
Strand 6
B
60 62anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
125 133parallel
Strand 3
B
94 102anti-parallel
Strand 4
B
120 121anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 9first strand
Strand 2
C
20 26anti-parallel
Strand 3
C
80 85anti-parallel
Strand 4
C
70 75anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
125 133parallel
Strand 3
C
94 102anti-parallel
Strand 4
C
34 41anti-parallel
Strand 5
C
48 54anti-parallel
Strand 6
C
60 62anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
125 133parallel
Strand 3
C
94 102anti-parallel
Strand 4
C
120 121anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 9first strand
Strand 2
D
20 26anti-parallel
Strand 3
D
80 85anti-parallel
Strand 4
D
70 75anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
125 133parallel
Strand 3
D
94 102anti-parallel
Strand 4
D
34 41anti-parallel
Strand 5
D
48 54anti-parallel
Strand 6
D
60 62anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
125 133parallel
Strand 3
D
94 102anti-parallel
Strand 4
D
120 121anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 9first strand
Strand 2
E
20 26anti-parallel
Strand 3
E
80 85anti-parallel
Strand 4
E
70 75anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
125 133parallel
Strand 3
E
94 102anti-parallel
Strand 4
E
34 41anti-parallel
Strand 5
E
48 54anti-parallel
Strand 6
E
60 62anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
125 133parallel
Strand 3
E
94 102anti-parallel
Strand 4
E
120 121anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 9first strand
Strand 2
F
20 26anti-parallel
Strand 3
F
80 85anti-parallel
Strand 4
F
70 75anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
125 133parallel
Strand 3
F
94 102anti-parallel
Strand 4
F
34 41anti-parallel
Strand 5
F
48 54anti-parallel
Strand 6
F
60 62anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
125 133parallel
Strand 3
F
94 102anti-parallel
Strand 4
F
120 121anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 9first strand
Strand 2
G
20 26anti-parallel
Strand 3
G
80 85anti-parallel
Strand 4
G
70 75anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
12 16first strand
Strand 2
G
125 133parallel
Strand 3
G
94 102anti-parallel
Strand 4
G
34 41anti-parallel
Strand 5
G
48 54anti-parallel
Strand 6
G
60 62anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
12 16first strand
Strand 2
G
125 133parallel
Strand 3
G
94 102anti-parallel
Strand 4
G
120 121anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 9first strand
Strand 2
H
20 26anti-parallel
Strand 3
H
80 85anti-parallel
Strand 4
H
70 75anti-parallel
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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 16first strand
Strand 2
H
125 133parallel
Strand 3
H
94 102anti-parallel
Strand 4
H
34 41anti-parallel
Strand 5
H
48 54anti-parallel
Strand 6
H
60 62anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 16first strand
Strand 2
H
125 133parallel
Strand 3
H
94 102anti-parallel
Strand 4
H
120 121anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
6 9first strand
Strand 2
I
20 26anti-parallel
Strand 3
I
80 85anti-parallel
Strand 4
I
70 75anti-parallel
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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
12 16first strand
Strand 2
I
125 133parallel
Strand 3
I
94 102anti-parallel
Strand 4
I
34 41anti-parallel
Strand 5
I
48 54anti-parallel
Strand 6
I
60 62anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
12 16first strand
Strand 2
I
125 133parallel
Strand 3
I
94 102anti-parallel
Strand 4
I
120 121anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
6 9first strand
Strand 2
J
20 26anti-parallel
Strand 3
J
80 85anti-parallel
Strand 4
J
70 75anti-parallel
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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
12 16first strand
Strand 2
J
125 133parallel
Strand 3
J
94 102anti-parallel
Strand 4
J
34 41anti-parallel
Strand 5
J
48 54anti-parallel
Strand 6
J
60 62anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
12 16first strand
Strand 2
J
125 133parallel
Strand 3
J
94 102anti-parallel
Strand 4
J
120 121anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
6 9first strand
Strand 2
K
20 26anti-parallel
Strand 3
K
80 85anti-parallel
Strand 4
K
70 75anti-parallel
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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
12 16first strand
Strand 2
K
125 133parallel
Strand 3
K
94 102anti-parallel
Strand 4
K
34 41anti-parallel
Strand 5
K
48 54anti-parallel
Strand 6
K
60 62anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
12 16first strand
Strand 2
K
125 133parallel
Strand 3
K
94 102anti-parallel
Strand 4
K
120 121anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 9first strand
Strand 2
L
20 26anti-parallel
Strand 3
L
80 85anti-parallel
Strand 4
L
70 75anti-parallel
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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
12 16first strand
Strand 2
L
125 133parallel
Strand 3
L
94 102anti-parallel
Strand 4
L
34 41anti-parallel
Strand 5
L
48 54anti-parallel
Strand 6
L
60 62anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
12 16first strand
Strand 2
L
125 133parallel
Strand 3
L
94 102anti-parallel
Strand 4
L
120 121anti-parallel
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