Analysis of interatomic Contacts of Structural Units in PDB entry:
5VM7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VM7 entry

There are 2 chains in PDB entry 5VM7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	ARG 420
B	MET 1	GLU 419

There are 28 helices in PDB entry 5VM7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	24	Right-handed alpha
Helix 2	AA2	A	133	142	Right-handed alpha
Helix 3	AA3	A	142	147	Right-handed alpha
Helix 4	AA4	A	149	178	Right-handed alpha
Helix 5	AA5	A	180	188	Right-handed alpha
Helix 6	AA6	A	204	209	Right-handed alpha
Helix 7	AA7	A	211	235	Right-handed alpha
Helix 8	AA8	A	295	303	Right-handed alpha
Helix 9	AA9	A	317	336	Right-handed alpha
Helix 10	AB1	A	337	339	Right-handed 310
Helix 11	AB2	A	402	417	Right-handed alpha
Helix 12	AB3	B	25	31	Right-handed alpha
Helix 13	AB4	B	32	34	Right-handed 310
Helix 14	AB5	B	47	61	Right-handed alpha
Helix 15	AB6	B	83	88	Right-handed alpha
Helix 16	AB7	B	91	97	Right-handed 310
Helix 17	AB8	B	98	103	Right-handed alpha
Helix 18	AB9	B	122	131	Right-handed alpha
Helix 19	AC1	B	163	171	Right-handed alpha
Helix 20	AC2	B	188	202	Right-handed alpha
Helix 21	AC3	B	231	244	Right-handed alpha
Helix 22	AC4	B	255	259	Right-handed 310
Helix 23	AC5	B	261	269	Right-handed alpha
Helix 24	AC6	B	310	316	Right-handed alpha
Helix 25	AC7	B	333	340	Right-handed alpha
Helix 26	AC8	B	373	378	Right-handed alpha
Helix 27	AC9	B	379	382	Right-handed 310
Helix 28	AD1	B	401	410	Right-handed alpha

There are 13 sheets in PDB entry 5VM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	61	64	anti-parallel
Strand 3	A	84	87	anti-parallel
Strand 4	A	382	386	anti-parallel
Strand 5	A	348	350	anti-parallel
Strand 6	A	273	275	anti-parallel
Strand 7	A	240	241	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	54	55	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	107	113	anti-parallel
Strand 3	A	100	103	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	253	first strand
Strand 2	A	262	270	anti-parallel
Strand 3	A	353	360	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	280	first strand
Strand 2	A	342	343	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	415	416	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	248	252	parallel
Strand 3	B	281	283	anti-parallel
Strand 4	B	272	274	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	42	first strand
Strand 2	B	225	227	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	70	72	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	139	first strand
Strand 2	B	142	144	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	182	first strand
Strand 2	B	213	216	anti-parallel
Strand 3	B	204	206	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	324	first strand
Strand 2	B	351	354	anti-parallel
Strand 3	B	345	348	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	388	390	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VM7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VM7