Analysis of interatomic Contacts of Structural Units in PDB entry:
5VM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VM8 entry

There are 2 chains in PDB entry 5VM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0THR 241
B
 HIS 0THR 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5VM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 29Right-handed alpha
Helix 2
AA2
A
85 99Right-handed alpha
Helix 3
AA3
A
119 140Right-handed alpha
Helix 4
AA4
A
153 158Right-handed alpha
Helix 5
AA5
A
198 208Right-handed alpha
Helix 6
AA6
A
223 237Right-handed alpha
Helix 7
AA7
B
19 29Right-handed alpha
Helix 8
AA8
B
85 99Right-handed alpha
Helix 9
AA9
B
121 140Right-handed alpha
Helix 10
AB1
B
153 158Right-handed alpha
Helix 11
AB2
B
176 180Right-handed 310
Helix 12
AB3
B
198 208Right-handed alpha
Helix 13
AB4
B
224 237Right-handed alpha
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There are 4 sheets in PDB entry 5VM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
36 40parallel
Strand 3
A
46 54anti-parallel
Strand 4
A
59 67anti-parallel
Strand 5
A
15 17anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
103 108parallel
Strand 3
A
77 82parallel
Strand 4
A
187 191parallel
Strand 5
A
165 169parallel
Strand 6
A
211 214parallel
Strand 7
A
174 176parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
36 40parallel
Strand 3
B
46 54anti-parallel
Strand 4
B
59 67anti-parallel
Strand 5
B
15 17anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
103 108parallel
Strand 3
B
77 82parallel
Strand 4
B
187 191parallel
Strand 5
B
165 169parallel
Strand 6
B
211 213parallel
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