Analysis of interatomic Contacts of Structural Units in PDB entry:
5VMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VMA entry

There is 1 chain in PDB entry 5VMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 703
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5VMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
48 66Right-handed alpha
Helix 3
AA3
A
68 82Right-handed alpha
Helix 4
AA4
A
95 99Right-handed 310
Helix 5
AA5
A
113 117Right-handed 310
Helix 6
AA6
A
132 141Right-handed alpha
Helix 7
AA7
A
183 187Right-handed 310
Helix 8
AA8
A
205 208Right-handed 310
Helix 9
AA9
A
225 242Right-handed alpha
Helix 10
AB1
A
246 261Right-handed alpha
Helix 11
AB2
A
262 265Right-handed 310
Helix 12
AB3
A
321 323Right-handed 310
Helix 13
AB4
A
324 331Right-handed alpha
Helix 14
AB5
A
344 364Right-handed alpha
Helix 15
AB6
A
377 381Right-handed 310
Helix 16
AB7
A
412 432Right-handed alpha
Helix 17
AB8
A
437 456Right-handed alpha
Helix 18
AB9
A
514 518Right-handed 310
Helix 19
AC1
A
534 557Right-handed alpha
Helix 20
AC2
A
560 579Right-handed alpha
Helix 21
AC3
A
593 599Right-handed 310
Helix 22
AC4
A
628 632Right-handed 310
Helix 23
AC5
A
640 644Right-handed alpha
Helix 24
AC6
A
645 650Right-handed 310
Helix 25
AC7
A
652 663Right-handed alpha
Helix 26
AC8
A
682 700Right-handed alpha
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There are 10 sheets in PDB entry 5VMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
151 153anti-parallel
Strand 3
A
171 174anti-parallel
Strand 4
A
190 191anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
210 211parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
219 223anti-parallel
Strand 3
A
298 302anti-parallel
Strand 4
A
310 313anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
373 375anti-parallel
Strand 3
A
395 398anti-parallel
Strand 4
A
391 392anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 464first strand
Strand 2
A
490 498anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 507first strand
Strand 2
A
524 529anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 591first strand
Strand 2
A
677 679anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 606first strand
Strand 2
A
635 639anti-parallel
Strand 3
A
625 626anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 612first strand
Strand 2
A
618 619anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 665first strand
Strand 2
A
670 671anti-parallel
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