Analysis of interatomic Contacts of Structural Units in PDB entry:
5VMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VMB entry

There is 1 chain in PDB entry 5VMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2LYS 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5VMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
11 27Right-handed alpha
Helix 3
AA3
A
39 47Right-handed alpha
Helix 4
AA4
A
48 53Right-handed 310
Helix 5
AA5
A
67 86Right-handed alpha
Helix 6
AA6
A
96 109Right-handed alpha
Helix 7
AA7
A
154 166Right-handed alpha
Helix 8
AA8
A
182 193Right-handed alpha
Helix 9
AA9
A
204 210Right-handed alpha
Helix 10
AB1
A
228 232Right-handed 310
Helix 11
AB2
A
244 256Right-handed alpha
Helix 12
AB3
A
264 279Right-handed alpha
Helix 13
AB4
A
280 304Right-handed alpha
Helix 14
AB5
A
310 312Right-handed 310
Helix 15
AB6
A
328 339Right-handed alpha
Helix 16
AB7
A
365 371Right-handed alpha
Helix 17
AB8
A
374 391Right-handed alpha
Helix 18
AB9
A
394 412Right-handed alpha
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There are 5 sheets in PDB entry 5VMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
341 342parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
61 62anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
237 241anti-parallel
Strand 3
A
222 226anti-parallel
Strand 4
A
196 200parallel
Strand 5
A
169 172parallel
Strand 6
A
114 118parallel
Strand 7
A
140 144parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
152 153anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
317 321anti-parallel
Strand 3
A
360 364anti-parallel
Strand 4
A
344 345anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il