Analysis of interatomic Contacts of Structural Units in PDB entry:
5VML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VML entry

There is 1 chain in PDB entry 5VML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4GLY 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5VML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
42 53Right-handed alpha
Helix 3
AA3
A
66 81Right-handed alpha
Helix 4
AA4
A
98 102Right-handed 310
Helix 5
AA5
A
103 115Right-handed alpha
Helix 6
AA6
A
115 123Right-handed alpha
Helix 7
AA7
A
125 133Right-handed alpha
Helix 8
AA8
A
142 148Right-handed alpha
Helix 9
AA9
A
152 174Right-handed alpha
Helix 10
AB1
A
190 195Right-handed alpha
Helix 11
AB2
A
197 207Right-handed alpha
Helix 12
AB3
A
215 228Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5VML.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
31 36parallel
Strand 3
A
7 10parallel
Strand 4
A
86 89parallel
Strand 5
A
135 140parallel
Strand 6
A
178 185parallel
Strand 7
A
238 241parallel
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