Analysis of interatomic Contacts of Structural Units in PDB entry:
5VMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VMQ entry

There are 3 chains in PDB entry 5VMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 310
B
 ASN 2ASN 305
C
 ALA 1VAL 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5VMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
16 33Right-handed alpha
Helix 3
AA3
A
52 66Right-handed alpha
Helix 4
AA4
A
86 96Right-handed alpha
Helix 5
AA5
A
110 119Right-handed alpha
Helix 6
AA6
A
135 150Right-handed alpha
Helix 7
AA7
A
166 177Right-handed alpha
Helix 8
AA8
A
189 193Right-handed 310
Helix 9
AA9
A
195 205Right-handed alpha
Helix 10
AB1
A
215 219Right-handed 310
Helix 11
AB2
A
231 235Right-handed 310
Helix 12
AB3
A
236 244Right-handed alpha
Helix 13
AB4
A
245 248Right-handed 310
Helix 14
AB5
A
250 255Right-handed 310
Helix 15
AB6
A
274 278Right-handed 310
Helix 16
AB7
A
284 305Right-handed alpha
Helix 17
AB8
B
11 15Right-handed 310
Helix 18
AB9
B
16 33Right-handed alpha
Helix 19
AC1
B
52 66Right-handed alpha
Helix 20
AC2
B
75 79Right-handed 310
Helix 21
AC3
B
87 96Right-handed alpha
Helix 22
AC4
B
110 116Right-handed alpha
Helix 23
AC5
B
134 150Right-handed alpha
Helix 24
AC6
B
166 177Right-handed alpha
Helix 25
AC7
B
189 193Right-handed 310
Helix 26
AC8
B
195 205Right-handed alpha
Helix 27
AC9
B
218 222Right-handed 310
Helix 28
AD1
B
250 255Right-handed 310
Helix 29
AD2
B
274 278Right-handed 310
Helix 30
AD3
B
284 305Right-handed alpha
Helix 31
AD4
C
11 15Right-handed 310
Helix 32
AD5
C
16 33Right-handed alpha
Helix 33
AD6
C
52 66Right-handed alpha
Helix 34
AD7
C
75 79Right-handed 310
Helix 35
AD8
C
87 97Right-handed alpha
Helix 36
AD9
C
110 117Right-handed alpha
Helix 37
AE1
C
134 150Right-handed alpha
Helix 38
AE2
C
166 177Right-handed alpha
Helix 39
AE3
C
189 193Right-handed 310
Helix 40
AE4
C
195 205Right-handed alpha
Helix 41
AE5
C
215 220Right-handed alpha
Helix 42
AE6
C
231 235Right-handed 310
Helix 43
AE7
C
236 243Right-handed 310
Helix 44
AE8
C
250 255Right-handed 310
Helix 45
AE9
C
274 278Right-handed 310
Helix 46
AF1
C
284 305Right-handed alpha
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There are 6 sheets in PDB entry 5VMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
43 48parallel
Strand 3
A
101 105parallel
Strand 4
A
124 128parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
183 187parallel
Strand 3
A
156 160parallel
Strand 4
A
224 227parallel
Strand 5
A
262 264parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
43 48parallel
Strand 3
B
101 105parallel
Strand 4
B
124 126parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 211first strand
Strand 2
B
183 187parallel
Strand 3
B
156 160parallel
Strand 4
B
224 227parallel
Strand 5
B
262 264parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 73first strand
Strand 2
C
43 48parallel
Strand 3
C
101 106parallel
Strand 4
C
124 129parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 211first strand
Strand 2
C
183 187parallel
Strand 3
C
156 160parallel
Strand 4
C
224 227parallel
Strand 5
C
262 264parallel
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