Analysis of interatomic Contacts of Structural Units in PDB entry:
5VMR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VMR entry

There are 4 chains in PDB entry 5VMR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 861	GLU 1291
B	LEU 861	GLU 1291
C	ASP 2	ILE 39
D	ASP 2	ILE 39

There are 14 helices in PDB entry 5VMR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	938	940	Right-handed 310
Helix 2	AA2	A	941	948	Right-handed alpha
Helix 3	AA3	A	1067	1080	Right-handed alpha
Helix 4	AA4	A	1261	1267	Right-handed alpha
Helix 5	AA5	B	938	940	Right-handed 310
Helix 6	AA6	B	941	948	Right-handed alpha
Helix 7	AA7	B	1067	1080	Right-handed alpha
Helix 8	AA8	B	1262	1267	Right-handed alpha
Helix 9	AA9	C	3	15	Right-handed alpha
Helix 10	AB1	C	17	29	Right-handed alpha
Helix 11	AB2	C	31	39	Right-handed alpha
Helix 12	AB3	D	3	15	Right-handed alpha
Helix 13	AB4	D	17	29	Right-handed alpha
Helix 14	AB5	D	31	36	Right-handed alpha

There are 13 sheets in PDB entry 5VMR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	875	877	first strand
Strand 2	A	864	870	anti-parallel
Strand 3	A	1054	1062	anti-parallel
Strand 4	A	898	901	anti-parallel
Strand 5	A	892	893	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	875	877	first strand
Strand 2	A	864	870	anti-parallel
Strand 3	A	1054	1062	anti-parallel
Strand 4	A	926	933	anti-parallel
Strand 5	A	1003	1009	anti-parallel
Strand 6	A	1013	1018	anti-parallel
Strand 7	A	1021	1027	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	884	887	first strand
Strand 2	A	909	912	anti-parallel
Strand 3	A	1040	1046	anti-parallel
Strand 4	A	949	957	anti-parallel
Strand 5	A	960	967	anti-parallel
Strand 6	A	970	976	anti-parallel
Strand 7	A	982	988	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1190	1192	first strand
Strand 2	A	1252	1260	anti-parallel
Strand 3	A	1234	1245	anti-parallel
Strand 4	A	1222	1226	anti-parallel
Strand 5	A	1208	1211	anti-parallel
Strand 6	A	1166	1173	anti-parallel
Strand 7	A	1176	1183	anti-parallel
Strand 8	A	1204	1205	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1194	1197	first strand
Strand 2	A	1176	1183	anti-parallel
Strand 3	A	1166	1173	anti-parallel
Strand 4	A	1145	1149	anti-parallel
Strand 5	A	1097	1102	anti-parallel
Strand 6	A	1280	1283	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1108	1112	first strand
Strand 2	A	1119	1123	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	875	877	first strand
Strand 2	B	864	870	anti-parallel
Strand 3	B	1054	1062	anti-parallel
Strand 4	B	898	901	anti-parallel
Strand 5	B	892	893	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	875	877	first strand
Strand 2	B	864	870	anti-parallel
Strand 3	B	1054	1062	anti-parallel
Strand 4	B	926	933	anti-parallel
Strand 5	B	1003	1009	anti-parallel
Strand 6	B	1013	1018	anti-parallel
Strand 7	B	1021	1027	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	884	887	first strand
Strand 2	B	909	912	anti-parallel
Strand 3	B	1040	1046	anti-parallel
Strand 4	B	949	957	anti-parallel
Strand 5	B	960	967	anti-parallel
Strand 6	B	970	976	anti-parallel
Strand 7	B	982	988	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1099	1102	first strand
Strand 2	B	1280	1283	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1108	1112	first strand
Strand 2	B	1119	1123	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1145	1149	first strand
Strand 2	B	1166	1173	anti-parallel
Strand 3	B	1176	1183	anti-parallel
Strand 4	B	1194	1197	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1190	1192	first strand
Strand 2	B	1254	1260	anti-parallel
Strand 3	B	1234	1243	anti-parallel
Strand 4	B	1222	1226	anti-parallel
Strand 5	B	1208	1211	anti-parallel
Strand 6	B	1166	1173	anti-parallel
Strand 7	B	1176	1183	anti-parallel
Strand 8	B	1204	1205	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VMR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VMR