Analysis of interatomic Contacts of Structural Units in PDB entry:
5VMT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VMT entry

There are 5 chains in PDB entry 5VMT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 333
B	MET 1	ILE 334
C	LYS 4	LYS 333
D	HIS 0	LYS 333
E	ILE 7	LEU 44

There are110 helices in PDB entry 5VMT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	23	Right-handed alpha
Helix 2	AA2	A	37	47	Right-handed alpha
Helix 3	AA3	A	79	83	Right-handed 310
Helix 4	AA4	A	84	89	Right-handed alpha
Helix 5	AA5	A	102	107	Right-handed alpha
Helix 6	AA6	A	107	112	Right-handed alpha
Helix 7	AA7	A	135	139	Right-handed 310
Helix 8	AA8	A	150	168	Right-handed alpha
Helix 9	AA9	A	201	205	Right-handed 310
Helix 10	AB1	A	212	221	Right-handed alpha
Helix 11	AB2	A	222	225	Right-handed 310
Helix 12	AB3	A	254	265	Right-handed alpha
Helix 13	AB4	A	278	283	Right-handed 310
Helix 14	AB5	A	294	296	Right-handed 310
Helix 15	AB6	A	316	333	Right-handed alpha
Helix 16	AB7	B	11	23	Right-handed alpha
Helix 17	AB8	B	37	47	Right-handed alpha
Helix 18	AB9	B	79	83	Right-handed 310
Helix 19	AC1	B	84	89	Right-handed alpha
Helix 20	AC2	B	102	107	Right-handed alpha
Helix 21	AC3	B	107	112	Right-handed alpha
Helix 22	AC4	B	135	139	Right-handed 310
Helix 23	AC5	B	150	168	Right-handed alpha
Helix 24	AC6	B	201	205	Right-handed 310
Helix 25	AC7	B	216	220	Right-handed 310
Helix 26	AC8	B	221	225	Right-handed 310
Helix 27	AC9	B	254	265	Right-handed alpha
Helix 28	AD1	B	278	283	Right-handed 310
Helix 29	AD2	B	294	296	Right-handed 310
Helix 30	AD3	B	316	332	Right-handed alpha
Helix 31	AD4	C	11	22	Right-handed alpha
Helix 32	AD5	C	37	47	Right-handed alpha
Helix 33	AD6	C	79	83	Right-handed 310
Helix 34	AD7	C	102	111	Right-handed alpha
Helix 35	AD8	C	135	139	Right-handed 310
Helix 36	AD9	C	150	167	Right-handed alpha
Helix 37	AE1	C	201	205	Right-handed 310
Helix 38	AE2	C	216	220	Right-handed 310
Helix 39	AE3	C	221	225	Right-handed 310
Helix 40	AE4	C	254	265	Right-handed alpha
Helix 41	AE5	C	278	283	Right-handed 310
Helix 42	AE6	C	294	296	Right-handed 310
Helix 43	AE7	C	316	332	Right-handed alpha
Helix 44	AE8	D	11	23	Right-handed alpha
Helix 45	AE9	D	37	47	Right-handed alpha
Helix 46	AF1	D	79	83	Right-handed 310
Helix 47	AF2	D	102	107	Right-handed alpha
Helix 48	AF3	D	107	112	Right-handed alpha
Helix 49	AF4	D	135	139	Right-handed 310
Helix 50	AF5	D	150	168	Right-handed alpha
Helix 51	AF6	D	201	205	Right-handed 310
Helix 52	AF7	D	212	221	Right-handed alpha
Helix 53	AF8	D	222	225	Right-handed 310
Helix 54	AF9	D	254	265	Right-handed alpha
Helix 55	AG1	D	278	283	Right-handed 310
Helix 56	AG2	D	294	296	Right-handed 310
Helix 57	AG3	D	316	332	Right-handed alpha
Helix 58	AG4	E	11	23	Right-handed alpha
Helix 59	AG5	E	37	47	Right-handed alpha
Helix 60	AG6	E	135	139	Right-handed 310
Helix 61	AG7	E	150	167	Right-handed alpha
Helix 62	AG8	E	201	205	Right-handed 310
Helix 63	AG9	E	216	220	Right-handed 310
Helix 64	AH1	E	221	225	Right-handed 310
Helix 65	AH2	E	254	265	Right-handed alpha
Helix 66	AH3	E	278	283	Right-handed 310
Helix 67	AH4	E	294	296	Right-handed 310
Helix 68	AH5	E	316	332	Right-handed alpha
Helix 69	AH6	F	11	23	Right-handed alpha
Helix 70	AH7	F	37	47	Right-handed alpha
Helix 71	AH8	F	79	83	Right-handed 310
Helix 72	AH9	F	84	89	Right-handed alpha
Helix 73	AI1	F	102	107	Right-handed alpha
Helix 74	AI2	F	107	112	Right-handed alpha
Helix 75	AI3	F	135	139	Right-handed 310
Helix 76	AI4	F	150	167	Right-handed alpha
Helix 77	AI5	F	201	205	Right-handed 310
Helix 78	AI6	F	216	220	Right-handed 310
Helix 79	AI7	F	221	225	Right-handed 310
Helix 80	AI8	F	254	265	Right-handed alpha
Helix 81	AI9	F	278	283	Right-handed 310
Helix 82	AJ1	F	294	296	Right-handed 310
Helix 83	AJ2	F	316	332	Right-handed alpha
Helix 84	AJ3	G	11	23	Right-handed alpha
Helix 85	AJ4	G	37	47	Right-handed alpha
Helix 86	AJ5	G	102	113	Right-handed alpha
Helix 87	AJ6	G	135	139	Right-handed 310
Helix 88	AJ7	G	150	168	Right-handed alpha
Helix 89	AJ8	G	201	205	Right-handed 310
Helix 90	AJ9	G	216	220	Right-handed 310
Helix 91	AK1	G	221	225	Right-handed 310
Helix 92	AK2	G	254	265	Right-handed alpha
Helix 93	AK3	G	278	283	Right-handed 310
Helix 94	AK4	G	294	296	Right-handed 310
Helix 95	AK5	G	316	332	Right-handed alpha
Helix 96	AK6	H	11	23	Right-handed alpha
Helix 97	AK7	H	37	47	Right-handed alpha
Helix 98	AK8	H	79	83	Right-handed 310
Helix 99	AK9	H	84	89	Right-handed alpha
Helix 100	AL1	H	102	107	Right-handed alpha
Helix 101	AL2	H	108	113	Right-handed 310
Helix 102	AL3	H	135	139	Right-handed 310
Helix 103	AL4	H	150	167	Right-handed alpha
Helix 104	AL5	H	201	205	Right-handed 310
Helix 105	AL6	H	216	220	Right-handed 310
Helix 106	AL7	H	221	225	Right-handed 310
Helix 107	AL8	H	254	265	Right-handed alpha
Helix 108	AL9	H	278	283	Right-handed 310
Helix 109	AM1	H	294	296	Right-handed 310
Helix 110	AM2	H	316	332	Right-handed alpha

There are 25 sheets in PDB entry 5VMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	64	67	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	27	33	parallel
Strand 5	A	3	8	parallel
Strand 6	A	92	95	parallel
Strand 7	A	116	119	parallel
Strand 8	A	145	147	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	210	first strand
Strand 2	A	228	235	anti-parallel
Strand 3	A	169	179	parallel
Strand 4	A	241	249	anti-parallel
Strand 5	A	304	313	anti-parallel
Strand 6	A	289	292	anti-parallel
Strand 7	A	270	273	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	210	first strand
Strand 2	A	228	235	anti-parallel
Strand 3	A	169	179	parallel
Strand 4	A	241	249	anti-parallel
Strand 5	A	304	313	anti-parallel
Strand 6	A	297	301	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	64	67	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	27	33	parallel
Strand 5	B	3	8	parallel
Strand 6	B	92	95	parallel
Strand 7	B	116	119	parallel
Strand 8	B	145	147	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	210	first strand
Strand 2	B	228	235	anti-parallel
Strand 3	B	169	179	parallel
Strand 4	B	241	249	anti-parallel
Strand 5	B	304	313	anti-parallel
Strand 6	B	289	292	anti-parallel
Strand 7	B	270	273	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	210	first strand
Strand 2	B	228	235	anti-parallel
Strand 3	B	169	179	parallel
Strand 4	B	241	249	anti-parallel
Strand 5	B	304	313	anti-parallel
Strand 6	B	297	301	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	61	first strand
Strand 2	C	64	67	anti-parallel
Strand 3	C	70	76	anti-parallel
Strand 4	C	29	34	parallel
Strand 5	C	5	8	parallel
Strand 6	C	92	95	parallel
Strand 7	C	116	119	parallel
Strand 8	C	145	147	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	209	first strand
Strand 2	C	228	235	anti-parallel
Strand 3	C	169	179	parallel
Strand 4	C	241	249	anti-parallel
Strand 5	C	304	313	anti-parallel
Strand 6	C	289	292	anti-parallel
Strand 7	C	270	273	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	209	first strand
Strand 2	C	228	235	anti-parallel
Strand 3	C	169	179	parallel
Strand 4	C	241	249	anti-parallel
Strand 5	C	304	313	anti-parallel
Strand 6	C	297	301	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	61	first strand
Strand 2	D	64	67	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	27	33	parallel
Strand 5	D	3	8	parallel
Strand 6	D	92	95	parallel
Strand 7	D	116	119	parallel
Strand 8	D	145	147	parallel
Strand 9	D	128	129	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	210	first strand
Strand 2	D	228	235	anti-parallel
Strand 3	D	169	179	parallel
Strand 4	D	241	249	anti-parallel
Strand 5	D	304	313	anti-parallel
Strand 6	D	289	292	anti-parallel
Strand 7	D	270	273	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	210	first strand
Strand 2	D	228	235	anti-parallel
Strand 3	D	169	179	parallel
Strand 4	D	241	249	anti-parallel
Strand 5	D	304	313	anti-parallel
Strand 6	D	297	301	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	73	75	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	59	first strand
Strand 2	E	66	67	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	209	first strand
Strand 2	E	228	235	anti-parallel
Strand 3	E	169	179	parallel
Strand 4	E	241	249	anti-parallel
Strand 5	E	304	313	anti-parallel
Strand 6	E	289	292	anti-parallel
Strand 7	E	270	273	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	209	first strand
Strand 2	E	228	235	anti-parallel
Strand 3	E	169	179	parallel
Strand 4	E	241	249	anti-parallel
Strand 5	E	304	313	anti-parallel
Strand 6	E	297	301	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	61	first strand
Strand 2	F	64	67	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	27	33	parallel
Strand 5	F	3	8	parallel
Strand 6	F	92	95	parallel
Strand 7	F	116	119	parallel
Strand 8	F	145	147	parallel
Strand 9	F	128	129	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	209	first strand
Strand 2	F	228	235	anti-parallel
Strand 3	F	169	179	parallel
Strand 4	F	241	249	anti-parallel
Strand 5	F	304	313	anti-parallel
Strand 6	F	289	292	anti-parallel
Strand 7	F	270	273	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	209	first strand
Strand 2	F	228	235	anti-parallel
Strand 3	F	169	179	parallel
Strand 4	F	241	249	anti-parallel
Strand 5	F	304	313	anti-parallel
Strand 6	F	297	301	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	61	first strand
Strand 2	G	64	67	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	28	33	parallel
Strand 5	G	4	8	parallel
Strand 6	G	92	95	parallel
Strand 7	G	116	119	parallel
Strand 8	G	145	147	parallel
Strand 9	G	128	129	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	207	210	first strand
Strand 2	G	228	235	anti-parallel
Strand 3	G	169	179	parallel
Strand 4	G	241	249	anti-parallel
Strand 5	G	304	313	anti-parallel
Strand 6	G	289	292	anti-parallel
Strand 7	G	270	273	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	207	210	first strand
Strand 2	G	228	235	anti-parallel
Strand 3	G	169	179	parallel
Strand 4	G	241	249	anti-parallel
Strand 5	G	304	313	anti-parallel
Strand 6	G	297	301	anti-parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	61	first strand
Strand 2	H	64	67	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	27	33	parallel
Strand 5	H	3	8	parallel
Strand 6	H	92	95	parallel
Strand 7	H	116	119	parallel
Strand 8	H	145	147	parallel
Strand 9	H	128	129	parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	207	210	first strand
Strand 2	H	228	235	anti-parallel
Strand 3	H	169	179	parallel
Strand 4	H	241	249	anti-parallel
Strand 5	H	304	313	anti-parallel
Strand 6	H	289	292	anti-parallel
Strand 7	H	270	273	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	207	210	first strand
Strand 2	H	228	235	anti-parallel
Strand 3	H	169	179	parallel
Strand 4	H	241	249	anti-parallel
Strand 5	H	304	313	anti-parallel
Strand 6	H	297	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VMT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VMT