Analysis of interatomic Contacts of Structural Units in PDB entry:
5VN2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VN2 entry

There are 4 chains in PDB entry 5VN2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 254
B
 HIS 0LEU 254
C
 HIS -5LEU 254
D
 SER 2LEU 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 5VN2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
40 49Right-handed alpha
Helix 3
AA3
A
63 65Right-handed 310
Helix 4
AA4
A
66 79Right-handed alpha
Helix 5
AA5
A
97 101Right-handed 310
Helix 6
AA6
A
102 114Right-handed alpha
Helix 7
AA7
A
114 130Right-handed alpha
Helix 8
AA8
A
145 149Right-handed 310
Helix 9
AA9
A
152 154Right-handed 310
Helix 10
AB1
A
155 176Right-handed alpha
Helix 11
AB2
A
193 198Right-handed alpha
Helix 12
AB3
A
199 209Right-handed alpha
Helix 13
AB4
A
219 232Right-handed alpha
Helix 14
AB5
A
235 239Right-handed 310
Helix 15
AB6
B
15 28Right-handed alpha
Helix 16
AB7
B
40 49Right-handed alpha
Helix 17
AB8
B
63 65Right-handed 310
Helix 18
AB9
B
66 79Right-handed alpha
Helix 19
AC1
B
97 101Right-handed 310
Helix 20
AC2
B
102 114Right-handed alpha
Helix 21
AC3
B
114 131Right-handed alpha
Helix 22
AC4
B
145 149Right-handed 310
Helix 23
AC5
B
152 154Right-handed 310
Helix 24
AC6
B
155 176Right-handed alpha
Helix 25
AC7
B
196 198Right-handed 310
Helix 26
AC8
B
199 209Right-handed alpha
Helix 27
AC9
B
219 232Right-handed alpha
Helix 28
AD1
B
235 239Right-handed 310
Helix 29
AD2
C
15 28Right-handed alpha
Helix 30
AD3
C
40 49Right-handed alpha
Helix 31
AD4
C
63 65Right-handed 310
Helix 32
AD5
C
66 79Right-handed alpha
Helix 33
AD6
C
97 101Right-handed 310
Helix 34
AD7
C
102 114Right-handed alpha
Helix 35
AD8
C
114 130Right-handed alpha
Helix 36
AD9
C
145 149Right-handed 310
Helix 37
AE1
C
152 154Right-handed 310
Helix 38
AE2
C
155 176Right-handed alpha
Helix 39
AE3
C
193 197Right-handed 310
Helix 40
AE4
C
199 209Right-handed alpha
Helix 41
AE5
C
219 232Right-handed alpha
Helix 42
AE6
C
235 239Right-handed 310
Helix 43
AE7
D
15 28Right-handed alpha
Helix 44
AE8
D
42 49Right-handed alpha
Helix 45
AE9
D
63 65Right-handed 310
Helix 46
AF1
D
66 79Right-handed alpha
Helix 47
AF2
D
97 101Right-handed 310
Helix 48
AF3
D
102 114Right-handed alpha
Helix 49
AF4
D
114 130Right-handed alpha
Helix 50
AF5
D
145 149Right-handed 310
Helix 51
AF6
D
152 154Right-handed 310
Helix 52
AF7
D
155 176Right-handed alpha
Helix 53
AF8
D
177 179Right-handed 310
Helix 54
AF9
D
193 198Right-handed 310
Helix 55
AG1
D
199 210Right-handed alpha
Helix 56
AG2
D
219 232Right-handed alpha
Helix 57
AG3
D
235 239Right-handed 310
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There are 4 sheets in PDB entry 5VN2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
31 36parallel
Strand 3
A
7 11parallel
Strand 4
A
83 86parallel
Strand 5
A
138 143parallel
Strand 6
A
181 188parallel
Strand 7
A
242 245parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
31 36parallel
Strand 3
B
7 11parallel
Strand 4
B
83 86parallel
Strand 5
B
138 143parallel
Strand 6
B
181 188parallel
Strand 7
B
242 245parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 58first strand
Strand 2
C
31 36parallel
Strand 3
C
7 11parallel
Strand 4
C
83 86parallel
Strand 5
C
138 143parallel
Strand 6
C
181 188parallel
Strand 7
C
242 245parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 58first strand
Strand 2
D
31 36parallel
Strand 3
D
7 10parallel
Strand 4
D
83 86parallel
Strand 5
D
138 143parallel
Strand 6
D
181 188parallel
Strand 7
D
242 245parallel
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