Analysis of interatomic Contacts of Structural Units in PDB entry:
5VN3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VN3 entry

There are 15 chains in PDB entry 5VN3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	GLU 1	ARG 108
A	LEU 515	ASP 664
G	ALA 32	VAL 505
C	LYS 1	VAL 176
H	GLN 1	THR 112
N	GLU 1	ARG 108
B	LEU 515	ASP 664
I	ALA 32	VAL 505
E	LYS 1	VAL 176
K	GLN 1	THR 112
O	GLU 1	ARG 108
D	LEU 515	ASP 664
J	ALA 32	VAL 505
F	LYS 1	VAL 176
M	GLN 1	THR 112

There are 48 helices in PDB entry 5VN3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	529	547	Right-handed alpha
Helix 2	AA2	A	565	568	Right-handed 310
Helix 3	AA3	A	569	593	Right-handed alpha
Helix 4	AA4	A	594	596	Right-handed 310
Helix 5	AA5	A	618	625	Right-handed alpha
Helix 6	AA6	A	627	635	Right-handed alpha
Helix 7	AA7	A	641	662	Right-handed alpha
Helix 8	AA8	G	64	73	Right-handed alpha
Helix 9	AA9	G	100	113	Right-handed alpha
Helix 10	AB1	G	334	350	Right-handed alpha
Helix 11	AB2	G	368	373	Right-handed alpha
Helix 12	AB3	G	387	392	Right-handed alpha
Helix 13	AB4	G	474	481	Right-handed alpha
Helix 14	AB5	C	58	62	Right-handed 310
Helix 15	AB6	C	75	79	Right-handed 310
Helix 16	AB7	H	28	32	Right-handed 310
Helix 17	AB8	B	529	547	Right-handed alpha
Helix 18	AB9	B	565	568	Right-handed 310
Helix 19	AC1	B	569	593	Right-handed alpha
Helix 20	AC2	B	594	596	Right-handed 310
Helix 21	AC3	B	618	625	Right-handed alpha
Helix 22	AC4	B	627	635	Right-handed alpha
Helix 23	AC5	B	641	662	Right-handed alpha
Helix 24	AC6	I	64	73	Right-handed alpha
Helix 25	AC7	I	100	113	Right-handed alpha
Helix 26	AC8	I	334	350	Right-handed alpha
Helix 27	AC9	I	368	373	Right-handed alpha
Helix 28	AD1	I	387	392	Right-handed alpha
Helix 29	AD2	I	474	481	Right-handed alpha
Helix 30	AD3	E	58	62	Right-handed 310
Helix 31	AD4	E	75	79	Right-handed 310
Helix 32	AD5	K	28	32	Right-handed 310
Helix 33	AD6	D	529	547	Right-handed alpha
Helix 34	AD7	D	565	568	Right-handed 310
Helix 35	AD8	D	569	593	Right-handed alpha
Helix 36	AD9	D	594	596	Right-handed 310
Helix 37	AE1	D	618	625	Right-handed alpha
Helix 38	AE2	D	627	635	Right-handed alpha
Helix 39	AE3	D	641	662	Right-handed alpha
Helix 40	AE4	J	64	73	Right-handed alpha
Helix 41	AE5	J	100	113	Right-handed alpha
Helix 42	AE6	J	334	350	Right-handed alpha
Helix 43	AE7	J	368	373	Right-handed alpha
Helix 44	AE8	J	387	392	Right-handed alpha
Helix 45	AE9	J	474	481	Right-handed alpha
Helix 46	AF1	F	58	62	Right-handed 310
Helix 47	AF2	F	75	79	Right-handed 310
Helix 48	AF3	M	28	32	Right-handed 310

There are 54 sheets in PDB entry 5VN3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	29	anti-parallel
Strand 3	L	68	75	anti-parallel
Strand 4	L	62	65	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	46	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	45	first strand
Strand 2	G	491	499	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	54	first strand
Strand 2	G	217	218	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	85	first strand
Strand 2	G	243	245	anti-parallel
Strand 3	G	224	227	anti-parallel
Strand 4	G	486	489	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	297	anti-parallel
Strand 3	G	329	332	anti-parallel
Strand 4	G	416	418	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	297	anti-parallel
Strand 3	G	445	454	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	357	361	first strand
Strand 2	G	465	468	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	378	first strand
Strand 2	G	381	385	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	423	425	first strand
Strand 2	G	432	434	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	92	97	parallel
Strand 3	C	81	84	anti-parallel
Strand 4	C	28	29	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	69	71	anti-parallel
Strand 3	C	55	56	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	43	44	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	112	119	anti-parallel
Strand 3	C	145	149	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	160	163	anti-parallel
Strand 3	C	166	168	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	23	first strand
Strand 2	H	77	82	anti-parallel
Strand 3	H	69	71	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	94	anti-parallel
Strand 5	H	102	103	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	94	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	6	first strand
Strand 2	N	19	29	anti-parallel
Strand 3	N	68	75	anti-parallel
Strand 4	N	62	65	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	54	first strand
Strand 2	N	46	49	anti-parallel
Strand 3	N	33	38	anti-parallel
Strand 4	N	85	90	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	35	45	first strand
Strand 2	I	491	499	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	217	218	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	85	first strand
Strand 2	I	243	245	anti-parallel
Strand 3	I	224	227	anti-parallel
Strand 4	I	486	489	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	297	anti-parallel
Strand 3	I	329	332	anti-parallel
Strand 4	I	416	418	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	297	anti-parallel
Strand 3	I	445	454	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	357	361	first strand
Strand 2	I	465	468	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	374	378	first strand
Strand 2	I	381	385	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	423	425	first strand
Strand 2	I	432	434	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	6	first strand
Strand 2	E	92	97	parallel
Strand 3	E	81	84	anti-parallel
Strand 4	E	28	29	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	69	71	anti-parallel
Strand 3	E	55	56	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	40	first strand
Strand 2	E	43	44	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	102	first strand
Strand 2	E	112	119	anti-parallel
Strand 3	E	145	149	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	129	first strand
Strand 2	E	160	163	anti-parallel
Strand 3	E	166	168	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	23	first strand
Strand 2	K	77	82	anti-parallel
Strand 3	K	69	71	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	57	59	first strand
Strand 2	K	45	51	anti-parallel
Strand 3	K	34	39	anti-parallel
Strand 4	K	88	94	anti-parallel
Strand 5	K	102	103	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	57	59	first strand
Strand 2	K	45	51	anti-parallel
Strand 3	K	34	39	anti-parallel
Strand 4	K	88	94	anti-parallel
Strand 5	K	107	109	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4	6	first strand
Strand 2	O	19	29	anti-parallel
Strand 3	O	68	75	anti-parallel
Strand 4	O	62	65	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	53	54	first strand
Strand 2	O	46	49	anti-parallel
Strand 3	O	33	38	anti-parallel
Strand 4	O	85	90	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	45	first strand
Strand 2	J	491	499	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	54	first strand
Strand 2	J	217	218	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	84	85	first strand
Strand 2	J	243	245	anti-parallel
Strand 3	J	224	227	anti-parallel
Strand 4	J	486	489	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	271	273	first strand
Strand 2	J	284	297	anti-parallel
Strand 3	J	329	332	anti-parallel
Strand 4	J	416	418	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	271	273	first strand
Strand 2	J	284	297	anti-parallel
Strand 3	J	445	454	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	357	361	first strand
Strand 2	J	465	468	parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	374	378	first strand
Strand 2	J	381	385	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	423	425	first strand
Strand 2	J	432	434	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	F	92	97	parallel
Strand 3	F	81	84	anti-parallel
Strand 4	F	28	29	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	69	71	anti-parallel
Strand 3	F	55	56	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	40	first strand
Strand 2	F	43	44	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	102	first strand
Strand 2	F	112	119	anti-parallel
Strand 3	F	145	149	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	129	first strand
Strand 2	F	160	163	anti-parallel
Strand 3	F	166	168	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	23	first strand
Strand 2	M	77	82	anti-parallel
Strand 3	M	69	71	anti-parallel

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There are 5 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	59	first strand
Strand 2	M	45	51	anti-parallel
Strand 3	M	34	39	anti-parallel
Strand 4	M	88	94	anti-parallel
Strand 5	M	102	103	anti-parallel

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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	59	first strand
Strand 2	M	45	51	anti-parallel
Strand 3	M	34	39	anti-parallel
Strand 4	M	88	94	anti-parallel
Strand 5	M	107	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VN3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VN3