Analysis of interatomic Contacts of Structural Units in PDB entry:
5VN4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VN4 entry

There are 2 chains in PDB entry 5VN4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1ILE 235
B
 MET 1ILE 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5VN4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 27Right-handed alpha
Helix 2
AA2
A
31 35Right-handed 310
Helix 3
AA3
A
45 50Right-handed alpha
Helix 4
AA4
A
51 68Right-handed alpha
Helix 5
AA5
A
82 85Right-handed 310
Helix 6
AA6
A
86 95Right-handed alpha
Helix 7
AA7
A
152 165Right-handed alpha
Helix 8
AA8
A
179 182Right-handed 310
Helix 9
AA9
A
183 190Right-handed alpha
Helix 10
AB1
A
191 194Right-handed 310
Helix 11
AB2
A
207 209Right-handed 310
Helix 12
AB3
A
210 214Right-handed 310
Helix 13
AB4
A
228 233Right-handed alpha
Helix 14
AB5
B
17 27Right-handed alpha
Helix 15
AB6
B
31 35Right-handed 310
Helix 16
AB7
B
45 50Right-handed alpha
Helix 17
AB8
B
51 67Right-handed alpha
Helix 18
AB9
B
82 85Right-handed 310
Helix 19
AC1
B
86 95Right-handed alpha
Helix 20
AC2
B
152 165Right-handed alpha
Helix 21
AC3
B
179 182Right-handed 310
Helix 22
AC4
B
183 190Right-handed alpha
Helix 23
AC5
B
191 194Right-handed 310
Helix 24
AC6
B
207 209Right-handed 310
Helix 25
AC7
B
210 214Right-handed 310
Helix 26
AC8
B
228 233Right-handed alpha
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There are 8 sheets in PDB entry 5VN4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
10 13anti-parallel
Strand 3
A
200 205parallel
Strand 4
A
168 177parallel
Strand 5
A
141 145parallel
Strand 6
A
75 79parallel
Strand 7
A
98 101parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
10 13anti-parallel
Strand 3
A
200 205parallel
Strand 4
A
168 177parallel
Strand 5
A
148 149parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
42 43anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
111 113anti-parallel
Strand 3
B
225 227parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
B
111 113parallel
Strand 3
B
130 132anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
10 13anti-parallel
Strand 3
B
200 205parallel
Strand 4
B
168 177parallel
Strand 5
B
141 145parallel
Strand 6
B
75 79parallel
Strand 7
B
98 101parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
10 13anti-parallel
Strand 3
B
200 205parallel
Strand 4
B
168 177parallel
Strand 5
B
148 149parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
42 43anti-parallel
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