Analysis of interatomic Contacts of Structural Units in PDB entry:
5VN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VN5 entry

There are 2 chains in PDB entry 5VN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 332
B
 MET 1LYS 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5VN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
37 47Right-handed alpha
Helix 3
AA3
A
54 63Right-handed alpha
Helix 4
AA4
A
72 76Right-handed 310
Helix 5
AA5
A
82 104Right-handed alpha
Helix 6
AA6
A
121 124Right-handed 310
Helix 7
AA7
A
125 135Right-handed alpha
Helix 8
AA8
A
159 161Right-handed 310
Helix 9
AA9
A
162 173Right-handed alpha
Helix 10
AB1
A
189 207Right-handed alpha
Helix 11
AB2
A
209 214Right-handed alpha
Helix 12
AB3
A
223 226Right-handed 310
Helix 13
AB4
A
227 241Right-handed alpha
Helix 14
AB5
A
245 251Right-handed alpha
Helix 15
AB6
A
261 273Right-handed alpha
Helix 16
AB7
A
301 308Right-handed alpha
Helix 17
AB8
A
312 321Right-handed alpha
Helix 18
AB9
A
321 328Right-handed alpha
Helix 19
AC1
B
12 26Right-handed alpha
Helix 20
AC2
B
37 47Right-handed alpha
Helix 21
AC3
B
54 63Right-handed alpha
Helix 22
AC4
B
72 76Right-handed 310
Helix 23
AC5
B
82 104Right-handed alpha
Helix 24
AC6
B
121 124Right-handed 310
Helix 25
AC7
B
125 135Right-handed alpha
Helix 26
AC8
B
159 161Right-handed 310
Helix 27
AC9
B
162 173Right-handed alpha
Helix 28
AD1
B
189 207Right-handed alpha
Helix 29
AD2
B
209 214Right-handed alpha
Helix 30
AD3
B
223 226Right-handed 310
Helix 31
AD4
B
227 240Right-handed alpha
Helix 32
AD5
B
245 251Right-handed alpha
Helix 33
AD6
B
261 273Right-handed alpha
Helix 34
AD7
B
301 308Right-handed alpha
Helix 35
AD8
B
312 321Right-handed alpha
Helix 36
AD9
B
321 328Right-handed alpha
Helix 37
AE1
C
12 26Right-handed alpha
Helix 38
AE2
C
37 47Right-handed alpha
Helix 39
AE3
C
54 62Right-handed alpha
Helix 40
AE4
C
72 76Right-handed 310
Helix 41
AE5
C
82 104Right-handed alpha
Helix 42
AE6
C
121 124Right-handed 310
Helix 43
AE7
C
125 135Right-handed alpha
Helix 44
AE8
C
159 161Right-handed 310
Helix 45
AE9
C
162 173Right-handed alpha
Helix 46
AF1
C
189 207Right-handed alpha
Helix 47
AF2
C
209 214Right-handed alpha
Helix 48
AF3
C
223 226Right-handed 310
Helix 49
AF4
C
227 239Right-handed alpha
Helix 50
AF5
C
245 251Right-handed alpha
Helix 51
AF6
C
261 273Right-handed alpha
Helix 52
AF7
C
301 307Right-handed alpha
Helix 53
AF8
C
312 321Right-handed alpha
Helix 54
AF9
C
321 328Right-handed alpha
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There are 6 sheets in PDB entry 5VN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
66 70parallel
Strand 3
A
108 110parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
140 142parallel
Strand 3
A
176 178parallel
Strand 4
A
219 221parallel
Strand 5
A
254 256parallel
Strand 6
A
277 278parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
66 70parallel
Strand 3
B
108 110parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 142first strand
Strand 2
B
176 178parallel
Strand 3
B
219 221parallel
Strand 4
B
254 256parallel
Strand 5
B
277 278parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 8first strand
Strand 2
C
66 70parallel
Strand 3
C
108 110parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 142first strand
Strand 2
C
176 178parallel
Strand 3
C
219 221parallel
Strand 4
C
254 256parallel
Strand 5
C
277 278parallel
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