Analysis of interatomic Contacts of Structural Units in PDB entry:
5VN6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VN6 entry

There are 2 chains in PDB entry 5VN6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 282
B
 MET 1PHE 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5VN6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 25Right-handed alpha
Helix 2
AA2
A
25 40Right-handed alpha
Helix 3
AA3
A
50 60Right-handed alpha
Helix 4
AA4
A
130 136Right-handed alpha
Helix 5
AA5
A
138 146Right-handed alpha
Helix 6
AA6
A
163 174Right-handed alpha
Helix 7
AA7
A
213 218Right-handed alpha
Helix 8
AA8
A
219 230Right-handed alpha
Helix 9
AA9
A
231 236Right-handed 310
Helix 10
AB1
B
18 24Right-handed 310
Helix 11
AB2
B
25 40Right-handed alpha
Helix 12
AB3
B
50 60Right-handed alpha
Helix 13
AB4
B
130 136Right-handed alpha
Helix 14
AB5
B
138 146Right-handed alpha
Helix 15
AB6
B
163 174Right-handed alpha
Helix 16
AB7
B
213 218Right-handed alpha
Helix 17
AB8
B
219 230Right-handed alpha
Helix 18
AB9
B
231 236Right-handed 310
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There are 8 sheets in PDB entry 5VN6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
12 15anti-parallel
Strand 3
A
41 44parallel
Strand 4
A
248 252anti-parallel
Strand 5
A
110 117anti-parallel
Strand 6
A
270 276anti-parallel
Strand 7
A
79 83anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
125 129anti-parallel
Strand 3
A
256 260anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
149 152anti-parallel
Strand 3
A
199 202anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
191 193anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
12 15anti-parallel
Strand 3
B
41 44parallel
Strand 4
B
248 252anti-parallel
Strand 5
B
110 117anti-parallel
Strand 6
B
270 276anti-parallel
Strand 7
B
79 83anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 241first strand
Strand 2
B
125 129anti-parallel
Strand 3
B
256 260anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 180first strand
Strand 2
B
149 152anti-parallel
Strand 3
B
199 202anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
191 193anti-parallel
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