Analysis of interatomic Contacts of Structural Units in PDB entry:
5VN7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VN7 entry

There are 4 chains in PDB entry 5VN7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6ALA 215
A
 VAL 217PHE 230
B
 ARG 7ALA 215
B
 VAL 217ALA 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5VN7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 32Right-handed alpha
Helix 2
AA2
A
36 62Right-handed alpha
Helix 3
AA3
A
80 101Right-handed alpha
Helix 4
AA4
A
104 128Right-handed alpha
Helix 5
AA5
A
130 154Right-handed alpha
Helix 6
AA6
A
154 162Right-handed alpha
Helix 7
AA7
A
164 192Right-handed alpha
Helix 8
AA8
A
200 225Right-handed alpha
Helix 9
AA9
A
226 230Right-handed 310
Helix 10
AB1
B
7 8Right-handed 310
Helix 11
AB2
B
9 32Right-handed alpha
Helix 12
AB3
B
36 62Right-handed alpha
Helix 13
AB4
B
80 101Right-handed alpha
Helix 14
AB5
B
104 128Right-handed alpha
Helix 15
AB6
B
130 154Right-handed alpha
Helix 16
AB7
B
154 162Right-handed alpha
Helix 17
AB8
B
164 192Right-handed alpha
Helix 18
AB9
B
200 216Right-handed alpha
Helix 19
AC1
B
216 226Right-handed alpha
Helix 20
AC2
B
227 230Right-handed 310
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There is 1 sheet (AA1) in PDB entry 5VN7.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
74 79anti-parallel
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