Analysis of interatomic Contacts of Structural Units in PDB entry:
5VNC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VNC entry

There are 2 chains in PDB entry 5VNC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ALA 639
B	SER 2	GLU 629

There are116 helices in PDB entry 5VNC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	40	Right-handed alpha
Helix 2	AA2	A	53	57	Right-handed alpha
Helix 3	AA3	A	65	69	Right-handed 310
Helix 4	AA4	A	73	86	Right-handed alpha
Helix 5	AA5	A	108	113	Right-handed 310
Helix 6	AA6	A	114	127	Right-handed alpha
Helix 7	AA7	A	134	158	Right-handed alpha
Helix 8	AA8	A	169	173	Right-handed alpha
Helix 9	AA9	A	174	182	Right-handed alpha
Helix 10	AB1	A	195	204	Right-handed alpha
Helix 11	AB2	A	217	225	Right-handed alpha
Helix 12	AB3	A	227	241	Right-handed alpha
Helix 13	AB4	A	248	260	Right-handed alpha
Helix 14	AB5	A	280	301	Right-handed alpha
Helix 15	AB6	A	308	310	Right-handed 310
Helix 16	AB7	A	327	346	Right-handed alpha
Helix 17	AB8	A	365	400	Right-handed alpha
Helix 18	AB9	A	412	416	Right-handed 310
Helix 19	AC1	A	418	433	Right-handed alpha
Helix 20	AC2	A	453	463	Right-handed alpha
Helix 21	AC3	A	491	499	Right-handed alpha
Helix 22	AC4	A	512	521	Right-handed alpha
Helix 23	AC5	A	531	541	Right-handed alpha
Helix 24	AC6	A	560	578	Right-handed alpha
Helix 25	AC7	A	579	593	Right-handed alpha
Helix 26	AC8	A	594	597	Right-handed 310
Helix 27	AC9	A	598	618	Right-handed alpha
Helix 28	AD1	A	618	627	Right-handed alpha
Helix 29	AD2	A	634	639	Right-handed alpha
Helix 30	AD3	B	22	40	Right-handed alpha
Helix 31	AD4	B	53	56	Right-handed 310
Helix 32	AD5	B	65	69	Right-handed 310
Helix 33	AD6	B	73	86	Right-handed alpha
Helix 34	AD7	B	111	113	Right-handed 310
Helix 35	AD8	B	114	127	Right-handed alpha
Helix 36	AD9	B	134	158	Right-handed alpha
Helix 37	AE1	B	174	182	Right-handed alpha
Helix 38	AE2	B	195	202	Right-handed alpha
Helix 39	AE3	B	208	213	Right-handed alpha
Helix 40	AE4	B	214	216	Right-handed 310
Helix 41	AE5	B	217	225	Right-handed alpha
Helix 42	AE6	B	227	241	Right-handed alpha
Helix 43	AE7	B	248	260	Right-handed alpha
Helix 44	AE8	B	280	301	Right-handed alpha
Helix 45	AE9	B	308	310	Right-handed 310
Helix 46	AF1	B	327	345	Right-handed alpha
Helix 47	AF2	B	365	399	Right-handed alpha
Helix 48	AF3	B	418	431	Right-handed alpha
Helix 49	AF4	B	449	452	Right-handed 310
Helix 50	AF5	B	453	462	Right-handed alpha
Helix 51	AF6	B	491	499	Right-handed alpha
Helix 52	AF7	B	512	521	Right-handed alpha
Helix 53	AF8	B	531	539	Right-handed alpha
Helix 54	AF9	B	545	549	Right-handed 310
Helix 55	AG1	B	560	578	Right-handed alpha
Helix 56	AG2	B	579	594	Right-handed alpha
Helix 57	AG3	B	598	618	Right-handed alpha
Helix 58	AG4	B	618	627	Right-handed alpha
Helix 59	AG5	C	22	31	Right-handed alpha
Helix 60	AG6	C	31	40	Right-handed alpha
Helix 61	AG7	C	53	56	Right-handed 310
Helix 62	AG8	C	65	69	Right-handed 310
Helix 63	AG9	C	73	87	Right-handed alpha
Helix 64	AH1	C	108	113	Right-handed 310
Helix 65	AH2	C	114	127	Right-handed alpha
Helix 66	AH3	C	134	158	Right-handed alpha
Helix 67	AH4	C	169	173	Right-handed alpha
Helix 68	AH5	C	174	182	Right-handed alpha
Helix 69	AH6	C	195	204	Right-handed alpha
Helix 70	AH7	C	217	225	Right-handed alpha
Helix 71	AH8	C	227	241	Right-handed alpha
Helix 72	AH9	C	248	260	Right-handed alpha
Helix 73	AI1	C	280	301	Right-handed alpha
Helix 74	AI2	C	308	310	Right-handed 310
Helix 75	AI3	C	327	345	Right-handed alpha
Helix 76	AI4	C	365	400	Right-handed alpha
Helix 77	AI5	C	412	416	Right-handed 310
Helix 78	AI6	C	418	433	Right-handed alpha
Helix 79	AI7	C	449	452	Right-handed 310
Helix 80	AI8	C	453	463	Right-handed alpha
Helix 81	AI9	C	491	499	Right-handed alpha
Helix 82	AJ1	C	512	521	Right-handed alpha
Helix 83	AJ2	C	531	541	Right-handed alpha
Helix 84	AJ3	C	560	577	Right-handed alpha
Helix 85	AJ4	C	579	593	Right-handed alpha
Helix 86	AJ5	C	594	597	Right-handed 310
Helix 87	AJ6	C	598	603	Right-handed alpha
Helix 88	AJ7	C	603	618	Right-handed alpha
Helix 89	AJ8	C	618	627	Right-handed alpha
Helix 90	AJ9	C	634	639	Right-handed alpha
Helix 91	AK1	D	22	40	Right-handed alpha
Helix 92	AK2	D	65	69	Right-handed 310
Helix 93	AK3	D	74	85	Right-handed alpha
Helix 94	AK4	D	111	113	Right-handed 310
Helix 95	AK5	D	114	127	Right-handed alpha
Helix 96	AK6	D	134	158	Right-handed alpha
Helix 97	AK7	D	174	182	Right-handed alpha
Helix 98	AK8	D	195	202	Right-handed alpha
Helix 99	AK9	D	217	226	Right-handed alpha
Helix 100	AL1	D	227	241	Right-handed alpha
Helix 101	AL2	D	248	260	Right-handed alpha
Helix 102	AL3	D	280	301	Right-handed alpha
Helix 103	AL4	D	308	310	Right-handed 310
Helix 104	AL5	D	327	345	Right-handed alpha
Helix 105	AL6	D	365	400	Right-handed alpha
Helix 106	AL7	D	412	416	Right-handed 310
Helix 107	AL8	D	418	433	Right-handed alpha
Helix 108	AL9	D	453	462	Right-handed alpha
Helix 109	AM1	D	491	499	Right-handed alpha
Helix 110	AM2	D	512	521	Right-handed alpha
Helix 111	AM3	D	531	541	Right-handed alpha
Helix 112	AM4	D	542	547	Right-handed alpha
Helix 113	AM5	D	560	578	Right-handed alpha
Helix 114	AM6	D	579	594	Right-handed alpha
Helix 115	AM7	D	598	618	Right-handed alpha
Helix 116	AM8	D	618	627	Right-handed alpha

There are 12 sheets in PDB entry 5VNC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	90	95	anti-parallel
Strand 3	A	102	106	anti-parallel
Strand 4	A	43	48	parallel
Strand 5	A	4	14	parallel
Strand 6	A	161	168	parallel
Strand 7	A	187	192	parallel
Strand 8	A	243	246	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	476	first strand
Strand 2	A	350	356	parallel
Strand 3	A	312	318	parallel
Strand 4	A	501	503	parallel
Strand 5	A	525	528	parallel
Strand 6	A	551	554	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	364	first strand
Strand 2	A	445	447	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	90	95	anti-parallel
Strand 3	B	102	106	anti-parallel
Strand 4	B	43	48	parallel
Strand 5	B	4	14	parallel
Strand 6	B	161	168	parallel
Strand 7	B	187	192	parallel
Strand 8	B	243	246	parallel
Strand 9	B	265	266	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	477	first strand
Strand 2	B	350	356	parallel
Strand 3	B	312	318	parallel
Strand 4	B	501	503	parallel
Strand 5	B	525	528	parallel
Strand 6	B	551	554	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	364	first strand
Strand 2	B	445	447	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	59	first strand
Strand 2	C	90	95	anti-parallel
Strand 3	C	102	106	anti-parallel
Strand 4	C	43	48	parallel
Strand 5	C	4	14	parallel
Strand 6	C	161	168	parallel
Strand 7	C	187	192	parallel
Strand 8	C	243	246	parallel
Strand 9	C	265	266	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	472	476	first strand
Strand 2	C	350	356	parallel
Strand 3	C	312	318	parallel
Strand 4	C	501	503	parallel
Strand 5	C	525	528	parallel
Strand 6	C	551	554	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	364	first strand
Strand 2	C	445	447	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	59	first strand
Strand 2	D	90	95	anti-parallel
Strand 3	D	102	106	anti-parallel
Strand 4	D	43	48	parallel
Strand 5	D	4	14	parallel
Strand 6	D	161	168	parallel
Strand 7	D	187	192	parallel
Strand 8	D	243	246	parallel
Strand 9	D	265	266	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	472	476	first strand
Strand 2	D	350	356	parallel
Strand 3	D	312	318	parallel
Strand 4	D	501	503	parallel
Strand 5	D	525	528	parallel
Strand 6	D	551	554	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	364	first strand
Strand 2	D	445	447	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VNC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VNC