Analysis of interatomic Contacts of Structural Units in PDB entry:
5VNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VNP entry

There are 2 chains in PDB entry 5VNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3LEU 292
B
 ILE 3LEU 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5VNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 48Right-handed 310
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
79 94Right-handed alpha
Helix 4
AA4
A
105 118Right-handed alpha
Helix 5
AA5
A
136 140Right-handed 310
Helix 6
AA6
A
141 143Right-handed 310
Helix 7
AA7
A
144 152Right-handed alpha
Helix 8
AA8
A
155 162Right-handed alpha
Helix 9
AA9
A
165 170Right-handed alpha
Helix 10
AB1
A
170 175Right-handed alpha
Helix 11
AB2
A
181 190Right-handed alpha
Helix 12
AB3
A
191 193Right-handed 310
Helix 13
AB4
A
194 197Right-handed 310
Helix 14
AB5
A
198 208Right-handed alpha
Helix 15
AB6
A
214 231Right-handed alpha
Helix 16
AB7
A
247 258Right-handed alpha
Helix 17
AB8
A
272 277Right-handed alpha
Helix 18
AB9
A
277 292Right-handed alpha
Helix 19
AC1
B
43 48Right-handed 310
Helix 20
AC2
B
50 55Right-handed alpha
Helix 21
AC3
B
79 94Right-handed alpha
Helix 22
AC4
B
105 118Right-handed alpha
Helix 23
AC5
B
136 140Right-handed 310
Helix 24
AC6
B
141 143Right-handed 310
Helix 25
AC7
B
144 152Right-handed alpha
Helix 26
AC8
B
155 162Right-handed alpha
Helix 27
AC9
B
165 170Right-handed alpha
Helix 28
AD1
B
172 176Right-handed 310
Helix 29
AD2
B
181 190Right-handed alpha
Helix 30
AD3
B
191 193Right-handed 310
Helix 31
AD4
B
194 197Right-handed 310
Helix 32
AD5
B
198 208Right-handed alpha
Helix 33
AD6
B
214 231Right-handed alpha
Helix 34
AD7
B
247 258Right-handed alpha
Helix 35
AD8
B
272 277Right-handed alpha
Helix 36
AD9
B
277 292Right-handed alpha
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There are 2 sheets in PDB entry 5VNP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
60 63anti-parallel
Strand 4
A
34 37parallel
Strand 5
A
99 104parallel
Strand 6
A
122 128parallel
Strand 7
A
235 242parallel
Strand 8
A
261 269parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
60 63anti-parallel
Strand 4
B
34 37parallel
Strand 5
B
99 104parallel
Strand 6
B
122 128parallel
Strand 7
B
235 242parallel
Strand 8
B
261 269parallel
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