Analysis of interatomic Contacts of Structural Units in PDB entry:
5VNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VNX entry

There are 6 chains in PDB entry 5VNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 241
A
 ALA 243ALA 393
B
 ASN 2GLY 241
B
 ALA 243ALA 393
C
 ASN 2GLY 241
C
 ALA 243ALA 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5VNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 17Right-handed alpha
Helix 2
AA2
A
55 70Right-handed alpha
Helix 3
AA3
A
83 98Right-handed alpha
Helix 4
AA4
A
111 124Right-handed alpha
Helix 5
AA5
A
137 147Right-handed alpha
Helix 6
AA6
A
158 169Right-handed alpha
Helix 7
AA7
A
190 202Right-handed alpha
Helix 8
AA8
A
217 221Right-handed 310
Helix 9
AA9
A
222 228Right-handed alpha
Helix 10
AB1
A
255 265Right-handed alpha
Helix 11
AB2
A
265 270Right-handed alpha
Helix 12
AB3
A
275 291Right-handed alpha
Helix 13
AB4
A
291 313Right-handed alpha
Helix 14
AB5
A
333 346Right-handed alpha
Helix 15
AB6
A
375 393Right-handed alpha
Helix 16
AB7
B
3 18Right-handed alpha
Helix 17
AB8
B
55 70Right-handed alpha
Helix 18
AB9
B
83 98Right-handed alpha
Helix 19
AC1
B
111 124Right-handed alpha
Helix 20
AC2
B
137 148Right-handed alpha
Helix 21
AC3
B
158 169Right-handed alpha
Helix 22
AC4
B
190 202Right-handed alpha
Helix 23
AC5
B
217 221Right-handed 310
Helix 24
AC6
B
222 228Right-handed alpha
Helix 25
AC7
B
255 265Right-handed alpha
Helix 26
AC8
B
265 270Right-handed alpha
Helix 27
AC9
B
275 291Right-handed alpha
Helix 28
AD1
B
291 313Right-handed alpha
Helix 29
AD2
B
333 346Right-handed alpha
Helix 30
AD3
B
375 393Right-handed alpha
Helix 31
AD4
C
3 17Right-handed alpha
Helix 32
AD5
C
55 70Right-handed alpha
Helix 33
AD6
C
83 98Right-handed alpha
Helix 34
AD7
C
111 124Right-handed alpha
Helix 35
AD8
C
137 147Right-handed alpha
Helix 36
AD9
C
158 169Right-handed alpha
Helix 37
AE1
C
190 202Right-handed alpha
Helix 38
AE2
C
217 221Right-handed 310
Helix 39
AE3
C
222 228Right-handed alpha
Helix 40
AE4
C
255 265Right-handed alpha
Helix 41
AE5
C
265 270Right-handed alpha
Helix 42
AE6
C
275 291Right-handed alpha
Helix 43
AE7
C
291 312Right-handed alpha
Helix 44
AE8
C
333 346Right-handed alpha
Helix 45
AE9
C
375 393Right-handed alpha
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There are 9 sheets in PDB entry 5VNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
349 350parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 109first strand
Strand 2
A
249 254anti-parallel
Strand 3
A
234 239anti-parallel
Strand 4
A
203 208parallel
Strand 5
A
174 179parallel
Strand 6
A
129 133parallel
Strand 7
A
150 154parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
326 332anti-parallel
Strand 3
A
364 369anti-parallel
Strand 4
A
353 354anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
39 43anti-parallel
Strand 3
B
349 350parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 109first strand
Strand 2
B
249 254anti-parallel
Strand 3
B
234 239anti-parallel
Strand 4
B
203 208parallel
Strand 5
B
173 179parallel
Strand 6
B
128 133parallel
Strand 7
B
150 154parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 319first strand
Strand 2
B
326 332anti-parallel
Strand 3
B
364 369anti-parallel
Strand 4
B
353 354anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 36first strand
Strand 2
C
39 43anti-parallel
Strand 3
C
349 350parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 109first strand
Strand 2
C
249 254anti-parallel
Strand 3
C
234 239anti-parallel
Strand 4
C
203 208parallel
Strand 5
C
173 179parallel
Strand 6
C
128 133parallel
Strand 7
C
150 154parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
318 319first strand
Strand 2
C
326 332anti-parallel
Strand 3
C
364 369anti-parallel
Strand 4
C
353 354anti-parallel
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