Analysis of interatomic Contacts of Structural Units in PDB entry:
5VNZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VNZ entry

There are 6 chains in PDB entry 5VNZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 53LEU 160
B
 GLY 3ASN 150
C
 MET 1GLY 76
D
 ASP 53HIS 163
E
 GLY 3ASN 151
F
 MET 1GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5VNZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 70Right-handed 310
Helix 2
AA2
A
91 101Right-handed alpha
Helix 3
AA3
A
121 130Right-handed alpha
Helix 4
AA4
A
148 156Right-handed alpha
Helix 5
AA5
B
5 18Right-handed alpha
Helix 6
AA6
B
88 93Right-handed alpha
Helix 7
AA7
B
100 114Right-handed alpha
Helix 8
AA8
B
122 132Right-handed alpha
Helix 9
AA9
B
132 148Right-handed alpha
Helix 10
AB1
C
22 35Right-handed alpha
Helix 11
AB2
C
37 41Right-handed 310
Helix 12
AB3
C
55 60Right-handed alpha
Helix 13
AB4
D
66 70Right-handed 310
Helix 14
AB5
D
91 101Right-handed alpha
Helix 15
AB6
D
121 130Right-handed alpha
Helix 16
AB7
D
148 156Right-handed alpha
Helix 17
AB8
E
5 18Right-handed alpha
Helix 18
AB9
E
88 92Right-handed 310
Helix 19
AC1
E
100 114Right-handed alpha
Helix 20
AC2
E
122 132Right-handed alpha
Helix 21
AC3
E
132 148Right-handed alpha
Helix 22
AC4
F
22 35Right-handed alpha
Helix 23
AC5
F
37 41Right-handed 310
Helix 24
AC6
F
55 60Right-handed alpha
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There are 8 sheets in PDB entry 5VNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
82 83anti-parallel
Strand 3
A
119 120anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
143 145anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 27first strand
Strand 2
B
34 40anti-parallel
Strand 3
B
51 57anti-parallel
Strand 4
B
68 71anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
65 70parallel
Strand 4
C
42 44anti-parallel
Strand 5
C
49 50anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 90first strand
Strand 2
D
82 83anti-parallel
Strand 3
D
119 120anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 134first strand
Strand 2
D
143 145anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
23 27first strand
Strand 2
E
34 40anti-parallel
Strand 3
E
51 57anti-parallel
Strand 4
E
68 71anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
2 6anti-parallel
Strand 3
F
65 70parallel
Strand 4
F
42 44anti-parallel
Strand 5
F
49 50anti-parallel
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