Analysis of interatomic Contacts of Structural Units in PDB entry:
5VOB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VOB entry

There are 7 chains in PDB entry 5VOB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 40	ALA 713
B	PRO 37	GLN 273
C	GLU 29	ARG 163
D	THR 45	VAL 214
E	GLN 19	ASN 129
H	LEU 1	PRO 222
L	GLU 1	GLU 214

There are 59 helices in PDB entry 5VOB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	98	Right-handed 310
Helix 2	AA2	A	99	107	Right-handed alpha
Helix 3	AA3	A	114	123	Right-handed alpha
Helix 4	AA4	A	127	132	Right-handed alpha
Helix 5	AA5	A	263	266	Right-handed 310
Helix 6	AA6	A	284	288	Right-handed 310
Helix 7	AA7	A	289	293	Right-handed 310
Helix 8	AA8	A	298	303	Right-handed alpha
Helix 9	AA9	A	308	316	Right-handed alpha
Helix 10	AB1	A	316	328	Right-handed alpha
Helix 11	AB2	A	334	353	Right-handed alpha
Helix 12	AB3	A	354	359	Right-handed 310
Helix 13	AB4	A	363	385	Right-handed alpha
Helix 14	AB5	A	387	391	Right-handed 310
Helix 15	AB6	A	396	409	Right-handed alpha
Helix 16	AB7	A	415	429	Right-handed alpha
Helix 17	AB8	A	431	435	Right-handed 310
Helix 18	AB9	A	436	454	Right-handed alpha
Helix 19	AC1	A	460	476	Right-handed alpha
Helix 20	AC2	A	480	494	Right-handed alpha
Helix 21	AC3	A	496	506	Right-handed alpha
Helix 22	AC4	A	514	519	Right-handed 310
Helix 23	AC5	A	520	524	Right-handed 310
Helix 24	AC6	A	531	537	Right-handed alpha
Helix 25	AC7	A	547	558	Right-handed alpha
Helix 26	AC8	A	644	648	Right-handed 310
Helix 27	AC9	A	671	680	Right-handed alpha
Helix 28	AD1	A	681	685	Right-handed 310
Helix 29	AD2	A	706	711	Right-handed alpha
Helix 30	AD3	B	46	57	Right-handed alpha
Helix 31	AD4	B	85	87	Right-handed 310
Helix 32	AD5	B	102	113	Right-handed alpha
Helix 33	AD6	B	117	127	Right-handed alpha
Helix 34	AD7	B	132	143	Right-handed alpha
Helix 35	AD8	B	215	218	Right-handed 310
Helix 36	AD9	B	219	236	Right-handed alpha
Helix 37	AE1	B	240	253	Right-handed alpha
Helix 38	AE2	C	69	82	Right-handed alpha
Helix 39	AE3	C	85	93	Right-handed alpha
Helix 40	AE4	C	94	97	Right-handed 310
Helix 41	AE5	C	145	155	Right-handed alpha
Helix 42	AE6	D	48	54	Right-handed alpha
Helix 43	AE7	D	55	57	Right-handed 310
Helix 44	AE8	D	67	69	Right-handed 310
Helix 45	AE9	D	80	84	Right-handed 310
Helix 46	AF1	D	104	118	Right-handed alpha
Helix 47	AF2	D	119	131	Right-handed alpha
Helix 48	AF3	D	140	151	Right-handed alpha
Helix 49	AF4	E	21	26	Right-handed alpha
Helix 50	AF5	E	35	41	Right-handed alpha
Helix 51	AF6	E	45	69	Right-handed alpha
Helix 52	AF7	E	73	79	Right-handed alpha
Helix 53	AF8	E	81	95	Right-handed alpha
Helix 54	AF9	H	28	32	Right-handed 310
Helix 55	AG1	H	62	65	Right-handed 310
Helix 56	AG2	H	87	91	Right-handed 310
Helix 57	AG3	H	194	198	Right-handed 310
Helix 58	AG4	L	79	83	Right-handed 310
Helix 59	AG5	L	184	190	Right-handed alpha

There are 24 sheets in PDB entry 5VOB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	69	71	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	86	92	anti-parallel
Strand 3	A	76	83	anti-parallel
Strand 4	B	178	184	parallel
Strand 5	B	188	197	anti-parallel
Strand 6	B	202	211	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	268	271	parallel
Strand 3	A	276	280	anti-parallel
Strand 4	A	246	251	anti-parallel
Strand 5	A	233	239	anti-parallel
Strand 6	A	224	230	anti-parallel
Strand 7	A	207	217	anti-parallel
Strand 8	A	193	197	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	361	362	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	257	258	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	528	first strand
Strand 2	A	578	581	anti-parallel
Strand 3	A	587	592	anti-parallel
Strand 4	A	614	619	anti-parallel
Strand 5	A	600	603	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	638	first strand
Strand 2	A	703	705	parallel
Strand 3	A	692	697	anti-parallel
Strand 4	A	652	658	anti-parallel
Strand 5	A	663	669	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	169	170	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	158	163	anti-parallel
Strand 3	D	98	102	parallel
Strand 4	D	87	93	anti-parallel
Strand 5	D	71	78	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	48	first strand
Strand 2	C	54	57	anti-parallel
Strand 3	C	62	65	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	101	103	anti-parallel
Strand 3	C	121	122	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	132	first strand
Strand 2	D	154	165	anti-parallel
Strand 3	D	168	182	anti-parallel
Strand 4	D	188	198	anti-parallel
Strand 5	E	117	126	anti-parallel
Strand 6	E	107	113	anti-parallel
Strand 7	E	97	98	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	103	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	103	anti-parallel
Strand 4	H	106	112	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	145	154	anti-parallel
Strand 3	H	185	193	anti-parallel
Strand 4	H	172	174	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	145	154	anti-parallel
Strand 3	H	185	193	anti-parallel
Strand 4	H	178	179	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	203	209	first strand
Strand 2	H	214	220	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	151	first strand
Strand 2	L	192	199	anti-parallel
Strand 3	L	206	207	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	151	first strand
Strand 2	L	192	199	anti-parallel
Strand 3	L	210	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VOB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VOB